SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene120080

Length: 264 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene120080
ATTCATGCATACGTTGCCTTGCTCACATTACTTCGAGATAATGACCTAGCTGTGAAACTTGCAGCTTGCAAATCATTGTGTATTCTTATTGAGGATGTCCCTCTCAACCATGAGCACTATGTGGAGTTCGTTCCAACGTTACTTGAACTTTGCTTTCAATCTGTACAAGTTCTTCAAGAATTTGATTCAAAGATCCAGATATTATATTTGCTGTCTGTTATGATTGACCAACTTGGTGAGAAGATTCTTCCATTTGCCCAGCAT

Ace file of the UniGene sp_v3.0_unigene120080 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Ran binding protein 11-like [Oryza sativa Japonica Group]	-	-	1.0e-15	45%
FL-Next	tr=T16O11.8 protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	48%

Source	Gene names
Sma3	PHYPADRAFT_136021; PHYPADRAFT_152314;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Exportin-1/Importin-beta-like	IPR013598	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G08960.1	ARM repeat superfamily protein chr3:2730405-2736762 REVERSE LENGTH=1010	5.0e-21	48%
RefSeq	Arabidopsis thaliana	NP_187508.5	armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]	7.0e-21	48%
RefSeq	Populus trichocarpa	XP_002323597.1	predicted protein [Populus trichocarpa]	3.0e-19	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q9SR95

Fln msg: Distance to subject end: 174 aas, your sequence is shorter than subject: 88 - 754

Fln protein: IHAYVALLTLLRDNDLAVKLAACKSLCILIEDVPLNHEHYVEFVPTLLELCFQSVQVLQEFDSKIQILYLLSVMIDQLGEKILPFAQH

Protein Length: 89

Fln nts: ATTCATGCATACGTTGCCTTGCTCACATTACTTCGAGATAATGACCTAGCTGTGAAACTTGCAGCTTGCAAATCATTGTGTATTCTTATTGAGGATGTCCCTCTCAACCATGAGCACTATGTGGAGTTCGTTCCAACGTTACTTGAACTTTGCTTTCAATCTGTACAAGTTCTTCAAGAATTTGATTCAAAGATCCAGATATTATATTTGCTGTCTGTTATGATTGACCAACTTGGTGAGAAGATTCTTCCATTTGCCCAGCAT

Fln Alignment:

AllPine_a_c55749___YVALLTLLRDNDLAVKLAACKSLCILIEDVPLNHEHYVEFVPTLLELCFQSVQVLQEFDSKIQILYLLSVMIDQLGEKILPFAQ
Q9SR95________________YCALIKLLQDNDLAVKLAASRSLCLHVEDANFSEQSFLDLLPICWDSCFKMVEVVQEFDSKVQILNLISTLIGHVSE-VIPYAQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain