SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene119666

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene119666
AATTTCAGTGAGCCTCCGGCGTCAAGATCTTACTTTGCGACAGTGGTCTCCGGATCGTTTTACAAAAGACTTTTTCCAGCTCAGAGCCTCCATTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCGCAGATTCCTGATAGCGTTGTAGACAAAAATTCTCCGGCATGGAATGGAGGGGCAGTTTACATATCCACCGATGAAGTGGGTGCTGCTTATCTTTCTCAATTTCGCAAAGATTTTTCTTCATTTTTGGCAGCACGAGCAGAGGAAATGGTAGCCGGAGGATGCATGTTCCTATGCCTAGTGGGCCGTAATTCCAAGGAC

Ace file of the UniGene sp_v3.0_unigene119666

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase	-	-	1.99965e-42	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	SAMT	-	-	4.551e-31	-

Source	ECs	Term	Type	e value	Identity
Sma3	Jasmonate O-methyltransferase.	EC:2.1.1.141	-	6.458e-26	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		6.458e-26	%

Source	Gene names
Sma3	AT4g26420; AbSAMT1; At1g19640; At4g26420; At5g37970; At5g55250; At5g66430; CCMT1; CCMT2; CCMT3; CJS1; CcCS2; CgCS1; CgCS2; CjCS1; CkCS1; ClCS1; ERAF16; F14P1.3; GSVIVT00006293001; GSVIVT00006296001; GSVIVT00006297001; GSVIVT00012765001; GSVIVT00014571001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	S-adenosylmethionine-dependent methyltransferase activity	GO:0008757	Molecular Function	-
Sma3	gibberellin carboxyl-O-methyltransferase activity	GO:0010341	Molecular Function	-
Sma3	jasmonate O-methyltransferase activity	GO:0030795	Molecular Function	-
Sma3	indole acetic acid carboxyl methyltransferase activity	GO:0051749	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	jasmonic acid metabolic process	GO:0009694	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G55250.1	IAMT1 IAA carboxylmethyltransferase 1 chr5:22407589-22410854 REVERSE LENGTH=386	9.0e-20	51%
RefSeq	Arabidopsis thaliana	NP_001078756.1	IAA carboxylmethyltransferase 1 [Arabidopsis thaliana]	7.0e-20	51%
RefSeq	Populus trichocarpa	XP_002298843.1	S-adenosyl-L-methionine:carboxyl methyltransferase family protein [Populus trichocarpa]	4.0e-20	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0Y6

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 109 - 389

Fln protein: NFSEPPASRSYFATVVSGSFYKRLFPAQSLHFCHSSSSLHWLSQIPDSVVDKNSPAWNGGAVYISTDEVGAAYLSQFRKDFSSFLAARAEEMVAGGCMFLCLVGRNSKD

Protein Length: 110

Fln nts: AATTTCAGTGAGCCTCCGGCGTCAAGATCTTACTTTGCGACAGTGGTCTCCGGATCGTTTTACAAAAGACTTTTTCCAGCTCAGAGCCTCCATTTTTGTCACTCTTCCAGCAGCCTTCACTGGCTTTCGCAGATTCCTGATAGCGTTGTAGACAAAAATTCTCCGGCATGGAATGGAGGGGCAGTTTACATATCCACCGATGAAGTGGGTGCTGCTTATCTTTCTCAATTTCGCAAAGATTTTTCTTCATTTTTGGCAGCACGAGCAGAGGAAATGGTAGCCGGAGGATGCATGTTCCTATGCCTAGTGGGCCGTAATTCCAAGGAC

Fln Alignment:

AllPine_a_c55214___FSEPPASRSYFATVVSGSFYKRLFPAQXXXXXXXXXXXXXXXQIPDSVVDKNSPAWNGGAVYISTDEVGAAYLSQFRKDFSSFLAARAEEMVAGGCMFLCLVGRNSKD
A9P0Y6________________FTEPPATRSYFAAVVSGSFYKRLFPPKTLHFCHSASSLHWLSKVPDCVVDRNSPAWNGGAVYISRDEVGAAYLSQFRKDFSAFLEARAEEMVPGGCMFICLTGRNSVD

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain