SustainPineDB

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Assembly info
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118520

Length: 418 nt

UniGene Fasta

>sp_v3.0_unigene118520
GTTTATTAACCTTGTGAACTCAAGTCAATTATGTAACATCCTTATTCTTGCAGGGAATTTTATAGGAAGAGGAGGCTGCAGTAAGGTGTACAGAGGATTTCTCCCTGATGGACAATCGGTGGCAGTGAAAATCTTGAATTCATCATCCAAAACAGAGCAAGAGCTTCTTTCTGAAGTTGAGATTCTTACTCTATTGAAACACAACCATGTCATTACACTTATCGGTTACTGCGCAGAAGGCCTTAACCGCCTTCTGGTGTATAATTTTGTATCCAGAGGAAACCTTGAAGAGAATCTCCATGGTATATACTCAATAGTATTGCATTTTAAGAATCATGAAATCGTGTAGAAATATTAAGCAGTAGTACGTTTTAAGCATCATAGTGTTATGTGTTGTATGGCAGGGTCTTTCATTTTC

Ace file of the UniGene sp_v3.0_unigene118520

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenine nucleotide alpha hydrolases-domain containing protein kinase [Arabidopsis thaliana] gb\|AAL57632.1\| At1g21590/F24J8_9 [Arabidopsis thaliana] gb\|AAM98263.1\| At1g21590/F24J8_9 [Arabidopsis thaliana] gb\|AEE30121.1\| adenine nucleotide alpha hydrolases-	-	-	3.0e-22	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphorylase kinase.	EC:2.7.11.19	-	6.505e-09	-

Source	Gene names
Sma3	At1g21590; GSVIVT00006021001; GSVIVT00015455001; PHYPADRAFT_146336; POPTRDRAFT_217237; POPTRDRAFT_558448; POPTRDRAFT_714592; POPTRDRAFT_816250; RCOM_0561590; RCOM_1189890; RCOM_1675090; T14N5.13; VITISV_043580;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21590.1	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain chr1:7566613-7569694 REVERSE LENGTH=756	4.0e-27	51%
RefSeq	Arabidopsis thaliana	NP_173578.2	adenine nucleotide alpha hydrolases-domain containing protein kinase [Arabidopsis thaliana]	6.0e-27	51%
RefSeq	Populus trichocarpa	XP_002306655.1	predicted protein, partial [Populus trichocarpa]	2.0e-27	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 270 aas, your sequence is shorter than subject: 116 - 656

Fln protein: FINLVNSSQLCNILILAGNFIGRGGCSKVYRGFLPDGQSVAVKILNSSSKTEQELLSEVEILTLLKHNHVITLIGYCAEGLNRLLVYNFVSRGNLEENLHGIYSIVLHFKNHEIV*

Protein Length: 117

Fln nts: GTTTATTAACCTTGTGAACTCAAGTCAATTATGTAACATCCTTATTCTTGCAGGGAATTTTATAGGAAGAGGAGGCTGCAGTAAGGTGTACAGAGGATTTCTCCCTGATGGACAATCGGTGGCAGTGAAAATCTTGAATTCATCATCCAAAACAGAGCAAGAGCTTCTTTCTGAAGTTGAGATTCTTACTCTATTGAAACACAACCATGTCATTACACTTATCGGTTACTGCGCAGAAGGCCTTAACCGCCTTCTGGTGTATAATTTTGTATCCAGAGGAAACCTTGAAGAGAATCTCCATGGTATATACTCAATAGTATTGCATTTTAAGAATCATGAAATCGTGTAGAAATATTAAGCAGTAGTACGTTTTAAGCATCATAGTGTTATGTGTTGTATGGCAGGGTCTTTCATTTTC

Fln Alignment:

AllPine_a_c53785___NFIGRGGCSKVYRGFLPDGQSVAVKILN-SSSKTEQELLSEVEILTLLKHNHVITLIGYCAEGLNRLLVYNFVSRGNLEENLHG
C0PRI9________________NLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain