SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118254

Length: 213 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene118254
TAAAGGCTCGCCTTATCCAAGGGGTTACTACAGGTGCAGCAGCTGTAAAGGATGCCCAGCAAGGAAGCAGGTTGAGCGTAGCCACACAGATCCCACTAAGCTCGTCATCACTTACACGGCTGAACACAACCATGCTTGGCCCACTTCTAACCCCAGAAACGGACTTGCACTCACAGGATCATTGAGTTCCACACAAAAAGATATGATGGCATT

Ace file of the UniGene sp_v3.0_unigene118254 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WRKY35 transcription factor n=1 Tax=Brassica napus RepID=C4N1L4_BRANA	-	-	6.0e-20	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Sma3	WRKY transcription factor, putative	-	-	1.087e-17	-

Source	Gene names
Sma3	A_IG002N01.6; At1g29280; At1g30650; At2g30590; At2g34830; At3g58710; At4g01250; At4g23550; At4g24240; At5g45050; At5g52830; F19I3.6; F2N1.6; GSVIVT00002171001; GSVIVT00002535001; GSVIVT00007309001; GSVIVT00018784001; GSVIVT00019549001; GSVIVT00023389001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	response to virus	GO:0009615	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	DNA-binding WRKY	IPR003657	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Transcription factor, WRKY group Iie	IPR017412	-	-
Sma3	Zn-cluster domain	IPR018872	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G29280.1	WRKY65, ATWRKY65 WRKY DNA-binding protein 65 chr1:10236589-10237467 FORWARD LENGTH=259	1.0e-26	80%
RefSeq	Arabidopsis thaliana	NP_174222.2	putative WRKY transcription factor 65 [Arabidopsis thaliana]	2.0e-26	80%
RefSeq	Populus trichocarpa	XP_002299016.1	predicted protein [Populus trichocarpa]	3.0e-25	80%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKE9

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 70 - 335

Fln protein: KGSPYPRGYYRCSSCKGCPARKQVERSHTDPTKLVITYTAEHNHAWPTSNPRNGLALTGSLSSTQKDMMA

Protein Length: 71

Fln nts: TAAAGGCTCGCCTTATCCAAGGGGTTACTACAGGTGCAGCAGCTGTAAAGGATGCCCAGCAAGGAAGCAGGTTGAGCGTAGCCACACAGATCCCACTAAGCTCGTCATCACTTACACGGCTGAACACAACCATGCTTGGCCCACTTCTAACCCCAGAAACGGACTTGCACTCACAGGATCATTGAGTTCCACACAAAAAGATATGATGGCATT

Fln Alignment:

AllPine_a_c53451___KGSPYPRGYYRCSSCKGCPARKQVERSHTDPTKLVITYTAEHNHA
B8LKE9________________KGSPYPRGYYKCSSMRGCPARKHVERCLDEPSMLIVTYEGEHNHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain