SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene118189

Length: 124 nt

UniGene Fasta

>sp_v3.0_unigene118189
GGCTGGATATGCAATTCATGGCTCTGGCAAGGAGGCCCTCAAACTCTTTGAACAAATGCAACATTCCGGCATGAAACCGGATCGTGTTACCTTTCTTGGTGTATTGTCCGCATGCAGCCATGCC

Ace file of the UniGene sp_v3.0_unigene118189

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SMZ2.1\|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170 emb\|CAB36791.1\| putative protein [Arabidopsis thaliana] emb\|CAB80034.1\| putative protein [Arabid	-	-	1.0e-08	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%

Source	Gene names
Sma3	At4g33170; At5g09950; F4I10.100; GSVIVT00017560001; GSVIVT00017804001; GSVIVT00022254001; MYH9.16; PCMP-H35; PCMP-H53; PHYPADRAFT_224041; POPTRDRAFT_576004; VITISV_041405;

Source	GOs	Term	Type	e value	Identity
Sma3	binding	GO:0005488	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	0.0	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G33170.1	Tetratricopeptide repeat (TPR)-like superfamily protein chr4:15995701-15998673 REVERSE LENGTH=990	1.0e-12	67%
RefSeq	Arabidopsis thaliana	NP_195043.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	1.0e-12	67%
RefSeq	Populus trichocarpa	XP_002322556.1	predicted protein [Populus trichocarpa]	5.0e-14	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Distance to subject end: 142 aas, your sequence is shorter than subject: 41 - 644

Fln protein: AGYAIHGSGKEALKLFEQMQHSGMKPDRVTFLGVLSACSHA

Protein Length: 42

Fln nts: GGCTGGATATGCAATTCATGGCTCTGGCAAGGAGGCCCTCAAACTCTTTGAACAAATGCAACATTCCGGCATGAAACCGGATCGTGTTACCTTTCTTGGTGTATTGTCCGCATGCAGCCATGCC

Fln Alignment:

AllPine_a_c53366___GYAIHGSGKEALKLFEQMQHSGMKPDRVTFLGVLSACSHA
B8LLJ0________________GYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain