SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116674

Length: 975 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene116674

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peroxidase n=1 Tax=Picea abies RepID=Q5W5I4_PICAB	-	-	0.0	84%
FL-Next	tr=Peroxidase; Picea abies (Norway spruce) (Picea excelsa).	-	-	0.0	84%

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylalanine metabolism	00360	%
Sma3	Methane metabolism	00680	%
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	px2;

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peroxidase, active site	IPR019794	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G71695.1	Peroxidase superfamily protein chr1:26964359-26966557 FORWARD LENGTH=358	60%
RefSeq	Arabidopsis thaliana	NP_177313.1	peroxidase 12 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002306716.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5W5I4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 272 - 353

Fln protein: S*PWLSLMLDGSASGPSEQGAPPNLSLRKKAFEIINDIKSHVDTACGSVVSCADVTALAAKESIRAAGGPQYRVPLGRRDSLKFATQNVTVANLPAPSFKVTALINAFASKNLNLTDLVALSGGHTIGMGHCTSFTDRLYPTQDTSLNNTFAQRLYTKCPSKTSTNTTVVDIRTPNVFDNKYYVDLMNREGLFTSDQDLYTDSRTKEIVKEFALNQDLFFQNFAVAMVKMSQLNVLTGSKGEIRHNCSASNLASTIEVAVEDVIESYASFM*

Protein Length: 273

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGGACGGATCAGCAAGTGGCCCCAGCGAACAAGGGGCTCCGCCCAACTTATCGCTGAGAAAGAAAGCGTTTGAAATAATAAACGACATCAAGAGCCACGTGGACACGGCTTGCGGCTCTGTTGTCTCCTGTGCCGACGTCACCGCTCTAGCGGCTAAAGAGTCGATCAGGGCGGCCGGAGGGCCACAGTACCGTGTACCGCTGGGACGCAGGGACAGCCTGAAATTCGCCACACAAAACGTGACCGTTGCGAACCTCCCAGCTCCCTCCTTTAAGGTGACCGCGCTAATCAATGCTTTTGCCTCCAAGAATCTCAACCTCACAGACCTCGTTGCTCTTTCAGGCGGACACACCATCGGCATGGGGCATTGCACCTCCTTCACCGACCGTCTATACCCGACGCAGGACACTAGTTTGAACAACACCTTCGCCCAGAGGCTGTACACCAAGTGTCCTTCCAAGACCTCCACCAACACCACCGTGGTGGACATTCGCACGCCCAACGTGTTCGACAACAAGTATTACGTGGACCTGATGAACCGAGAGGGCCTGTTCACCTCCGATCAGGATCTCTACACCGACTCCCGCACCAAAGAAATTGTGAAGGAGTTTGCCCTGAATCAAGATCTTTTCTTCCAGAACTTTGCAGTGGCCATGGTGAAGATGAGCCAGCTCAACGTGCTCACCGGATCCAAAGGGGAGATCAGGCATAACTGTTCCGCTAGCAATCTGGCCTCGACGATCGAAGTGGCGGTAGAAGACGTTATTGAATCTTATGCGTCATTCATGTAA___ATGCAGGCACGAAGGCCATGGCTGGTCTTTCAGAGGTTCTTATGTGCGCTTTTTCGATGTGTTTTTTTCTTGCAAAGTTGGGTCTTATTGTTTTACATGTACACAGTGTGACGGACGTCTCTGAACAGAGGCCTTAGAAATCGTACTCTCAGCTCTC

Fln Alignment:

AllPine_a_c51603___SLMLDGSASGPSEQGAPPNLSLRKKAFEIINDIKSHVDTACGSVVSCADVTALAAKESIRAAGGPQYRVPLGRRDSLKFATQNVTVANLPAPSFKVTALINAFASKNLNLTDLVALSGGHTIGMGHCTSFTDRLYPTQDTSLNNTFAQRLYTKCPSKTSTNTTVVDIRTPNVFDNKYYVDLMNREGLFTSDQDLYTDSRTKEIVKEFALNQDLFFQNFAVAMVKMSQLNVLTGSKGEIRHNCSASNLA--STIEVAVEDVIESYASFM
Q5W5I4________________SVLLAGSTSGPSEQGAPPNLSLRAKAFEIINDIKSRVDKACKVVVSCADVTALAAKESVRAAGGPQYRIPLGRRDSLKFATQNVTLANLPAPSSKVTTLIKAFATKNLNVTDLVALSGGHTIGIGHCTSFTDRLYPKQDTTLNKSFAQRLYTACPPKTSSNTTVLDIRTPNVFDNKYYVDLMNRQGLFTSDQDLYSDSRTKAIVNDFALDQDLFFEKFAVAMVKMGQLNVLTGSKGEIRSNCSVSNLASTSTVEVAAEDVIESYASFM

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
423	66			33	0.997453
425		66	33		0.997453
571	66		33		0.997454
619	33	66			0.997452
624	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain