SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene116604

Length: 223 nt

UniGene Fasta

>sp_v3.0_unigene116604
TGGGAGAGGAAGAGGAGAAGATATTTGTGAGTATTCGAGTGAGACCATTGAGTGAGAAGGAGATCGCCAGAAGGGATGTTTCAGACTGGGAATGCATTAATGATAAAACACTGGTCTATAAATACACCATTCCGGAGCGATCTCTGTTTCCAACTGCATATTCATTTGATAGAGTATTTGGGGGTGAAGCCTCAACAGATGAGGTGTATGAGGATGGGGCAAA

Ace file of the UniGene sp_v3.0_unigene116604

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R839_RICCO	-	-	3.0e-23	63%
FL-Next	tr=ATP binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	63%
Sma3	Kinesin like protein	-	-	1.256e-06	-

Source	Gene names
Sma3	AT4g24170; AT4g38950; At2g21300; At4g24170; At4g38950; At5g42490; F19H22.50; F24M12.190; GSVIVT00014496001; GSVIVT00035965001; GSVIVT00036821001; KIN15; OSJNBa0011L07.1; Os02g0645100; Os04g0538800; OsI_08272; OsI_16807; OsJ_07710; OsJ_15615; P0030D07.15;

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	-
Sma3	Ribosome-associated, YjgA	IPR006839	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51150.2	-	6.0e-26	65%
RefSeq	Arabidopsis thaliana	NP_190684.3	ATP binding microtubule motor family protein [Arabidopsis thaliana]	8.0e-26	65%
RefSeq	Populus trichocarpa	XP_002301999.1	predicted protein [Populus trichocarpa]	2.0e-27	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R839

Fln msg: Distance to subject end: 844 aas, your sequence is shorter than subject: 73 - 939

Fln protein: GEEEEKIFVSIRVRPLSEKEIARRDVSDWECINDKTLVYKYTIPERSLFPTAYSFDRVFGGEASTDEVYEDGA

Protein Length: 74

Fln nts: TGGGAGAGGAAGAGGAGAAGATATTTGTGAGTATTCGAGTGAGACCATTGAGTGAGAAGGAGATCGCCAGAAGGGATGTTTCAGACTGGGAATGCATTAATGATAAAACACTGGTCTATAAATACACCATTCCGGAGCGATCTCTGTTTCCAACTGCATATTCATTTGATAGAGTATTTGGGGGTGAAGCCTCAACAGATGAGGTGTATGAGGATGGGGCAAA

Fln Alignment:

AllPine_a_c51529___EEEEKIFVSIRVRPLSEKEIARRDVSDWECINDKTLVYKYTIPERSLFPTAYSFDRVFGGEASTDEVYEDGA
B9R839________________EQEEKIFVSVRMRPLNEREVARNDICDWECINNNTIIFKSNMPDRSMVPTAYTFDRVFGSECSTKQVYEEGA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain