SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115418

Length: 243 nt

UniGene Fasta

>sp_v3.0_unigene115418
ACCGATGGGATTCATGTGCAGCAATCTTCCAACGTGAAGATTCTCGGTGTTAATATAGGGACGGGAGATGACTGTATTTCCGTCGGACCTTGGCTTTCACTTATTTGTTCAGGGTGTTCATTGTGGACCAGGTCATGGAATAAGTGTGGGAAGCCTAGGTAAAGATTCCAATCCTAGCATAGGTGTAAGCAACGTCATAGTGGAACAAGCCTCCTTCTCGGGTACCCAAAACGGTTTTAGGAT

Ace file of the UniGene sp_v3.0_unigene115418

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase n=8 Tax=Prunus RepID=PGLR_PRUPE	-	-	1.0e-17	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Ripening-induced polygalacturonase	-	-	5.361e-06	-

Source	GOs	Term	Type	e value	Identity
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	0.0	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G59850.1	Pectin lyase-like superfamily protein chr3:22109343-22111566 REVERSE LENGTH=388	1.0e-19	57%
RefSeq	Arabidopsis thaliana	NP_191544.2	polygalacturonase [Arabidopsis thaliana]	2.0e-19	57%
RefSeq	Populus trichocarpa	XP_002331621.1	predicted protein [Populus trichocarpa]	1.0e-19	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQB8

Fln msg: Separated hits, possible frame ERROR between 84 and 98, Distance to subject end: 127 aas, your sequence is shorter than subject: 81 - 440

Fln protein: TDGIHVQQSSNVKILGVNIGTGDDCISxxxxxxHLFVQGVHCGPGHGISVGSLGKDSNPSIGVSNVIVEQASFSGTQNGFR

Protein Length: 82

Fln nts: ACCGATGGGATTCATGTGCAGCAATCTTCCAACGTGAAGATTCTCGGTGTTAATATAGGGACGGGAGATGACTGTATTTCCGTxxxxxxxxxxxxxxxTCACTTATTTGTTCAGGGTGTTCATTGTGGACCAGGTCATGGAATAAGTGTGGGAAGCCTAGGTAAAGATTCCAATCCTAGCATAGGTGTAAGCAACGTCATAGTGGAACAAGCCTCCTTCTCGGGTACCCAAAACGGTTTTAGGAT

Fln Alignment:

AllPine_a_c50080___TDGIHVQQSSNVKILGVNIGTGDDCISVxxxxxHLFVQGVHCGPGHGISVGSLGKDSNPSIGVSNVIVEQASFSGTQNGFR
C0PQB8________________TDGIHIFTSEHVMIRNCTIATGDDCVSIxxxxxHIQVNDIICGPGHGISIGSLGK-YNATDTVSDVVVNRASLSGTQNGLR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain