SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene115322

Length: 247 nt

UniGene Fasta

>sp_v3.0_unigene115322
CGTCGTGACCTTGGCTGTCACTCAGGATTTGTCCTTTAGCCTGGACTTTGAATGGTGTCATGACATCTCAATATGGAGATATGAGAAAGATAATAAGTATCGATGGCAATCTTCAGAAAGCAATTGAAGACTTCTTGAAAGATTATTTCGGATTTCAGCGTGACTTCTTGGGTGTTGTGGCTGCGGTCCTGGTGATCTTCCCTGTATTCTTTGCACTCTTGTTTTCTATATCTATAAGCAAATTCAA

Ace file of the UniGene sp_v3.0_unigene115322

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Pleiotropic drug resistance protein 15 emb\|CAD59563.1\| PDR-like ABC transporter [Oryza sativa Japonica Group]	-	-	1.0e-14	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%

Source	Gene names
Sma3	GSVIVT00019709001; POPTRDRAFT_581554; POPTRDRAFT_769908; RCOM_1434460;

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	2.0e-16	46%
RefSeq	Arabidopsis thaliana	NP_680693.5	ABC transporter G family member 42 [Arabidopsis thaliana]	8.0e-17	50%
RefSeq	Populus trichocarpa	XP_002334346.1	predicted protein [Populus trichocarpa]	7.0e-22	58%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW55

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 4 aas, your sequence is shorter than subject: 81 - 471

Fln protein: S*PWLSLRICPLAWTLNGVMTSQYGDMRKIISIDGNLQKAIEDFLKDYFGFQRDFLGVVAAVLVIFPVFFALLFSISISKF

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATTTGTCCTTTAGCCTGGACTTTGAATGGTGTCATGACATCTCAATATGGAGATATGAGAAAGATAATAAGTATCGATGGCAATCTTCAGAAAGCAATTGAAGACTTCTTGAAAGATTATTTCGGATTTCAGCGTGACTTCTTGGGTGTTGTGGCTGCGGTCCTGGTGATCTTCCCTGTATTCTTTGCACTCTTGTTTTCTATATCTATAAGCAAATTCAA

Fln Alignment:

AllPine_a_c49980___ICPLAWTLNGVMTSQYGDMRKIISIDGNLQKAIEDFLKDYFGFQRDFLGVVAAVLVIFPVFFALLFSISISKF
A9NW55________________ICPLAWTLNGLVTSQYGDMRKKISIDGKPQQAIEDFLKDYFGFQRDFLGVVAAVLVIFPIFFALLFSISISRF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain