SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene114762

Length: 427 nt

UniGene Fasta

>sp_v3.0_unigene114762
GAGGGTCTTCCCTGTTTTCTTTTTGGAGAGTCCATGGGAGGAGCAGTGGCTCTGAAGATTCATTTAAAGCAGCCCAATGCATGGGATGGAGCTGTTCTCCTTGCTCCAATGTGTAAAATAATTTCGCTATATCTTGGCTCGAGAAGCAGATTTTAATTGGCATGGCTCACATGTTTCCGAAACTGAAATTTCCTCAGAAAGACTTGGGCCAGATTTTATTTAGAGATGTCAACAAGAGAAAGATGGCTGGTTATAACGTAATTGCGTACAAAGATTGGCCACGCTTCAGGACTGACATAGAGATGCTAAGAACTACCTCGGAGATAGAAAAACGATTGCAAGAGGTTTCTTTGCCATTATTAATTCTACATGGTGCTGCTGATATGATCACTGATCTCTCTGGAAGCACGGCTCTATATGAGAAGTC

Ace file of the UniGene sp_v3.0_unigene114762

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	-	-	0.0001	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Sma3	Monoglyceride lipase, putative	-	-	4.745e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acylglycerol lipase.	EC:3.1.1.23	-	2.768e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycerolipid metabolism	00561		2.768e-08	%
Sma3	Metabolic pathways	01100		2.768e-08	%

Source	Gene names
Sma3	At5g16120; GSVIVT00030348001; GSVIVT00038225001; LOC_Os10g04620; OSJNBa0087H07.2; Os01g0688200; Os10g0135600; OsI_03323; OsI_04349; OsI_32679; OsJ_01498; OsJ_03062; OsJ_04002; OsJ_30647; P0519D04.28; PHYPADRAFT_153198; POPTRDRAFT_277086; POPTRDRAFT_568264

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity	GO:0016787	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	0.0	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G77420.1	alpha/beta-Hydrolases superfamily protein chr1:29093641-29095442 FORWARD LENGTH=382	1.0e-32	48%
RefSeq	Arabidopsis thaliana	NP_177867.1	alpha/beta-hydrolase-like protein [Arabidopsis thaliana]	2.0e-32	48%
RefSeq	Populus trichocarpa	XP_002329285.1	predicted protein [Populus trichocarpa]	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQD9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 56 aas, your sequence is shorter than subject: 52 - 313

Fln protein: EGLPCFLFGESMGGAVALKIHLKQPNAWDGAVLLAPMCKIISLYLGSRSRF*

Protein Length: 53

Fln nts: GAGGGTCTTCCCTGTTTTCTTTTTGGAGAGTCCATGGGAGGAGCAGTGGCTCTGAAGATTCATTTAAAGCAGCCCAATGCATGGGATGGAGCTGTTCTCCTTGCTCCAATGTGTAAAATAATTTCGCTATATCTTGGCTCGAGAAGCAGATTTTAATTGGCATGGCTCACATGTTTCCGAAACTGAAATTTCCTCAGAAAGACTTGGGCCAGATTTTATTTAGAGATGTCAACAAGAGAAAGATGGCTGGTTATAACGTAATTGCGTACAAAGATTGGCCACGCTTCAGGACTGACATAGAGATGCTAAGAACTACCTCGGAGATAGAAAAACGATTGCAAGAGGTTTCTTTGCCATTATTAATTCTACATGGTGCTGCTGATATGATCACTGATCTCTCTGGAAGCACGGCTCTATATGAGAAGTC

Fln Alignment:

AllPine_a_c49291___FLFGESMGGAVALKIHLKQPNAWDGAVLLAPMCKI
A9NQD9________________FLYGESMGGAVALLIHRKQPNYWSGAVLVAPMCKI

SNPs (tot: 3)

Position	A %	G %	T %	Probability
375		50	25	0.995533
388	66	33		0.997452
389		33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain