SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113541

Length: 129 nt

UniGene Fasta

>sp_v3.0_unigene113541
AATTCATGAAAGTCTCGGACATGCTGGATCCAGATGCAGGGTTCCTTACCCGTGACACAGTTGTATTTGTTTGTGAGATTCTGGATTGTTGTCCCTGGTTTGAGTTTTCTGATCTTGAGGTAATGGTTT

Ace file of the UniGene sp_v3.0_unigene113541

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CGS1 mRNA stability 1 n=2 Tax=Arabidopsis thaliana RepID=Q0KKQ1_ARATH	-	-	4.0e-15	90%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	83%

Source	Gene names
Sma3	At2g25320; At2g25330; CMS1; GSVIVT00016965001; GSVIVT00032679001; OsI_08052; OsJ_07511; PHYPADRAFT_188453; POPTRDRAFT_561919; POPTRDRAFT_762161; RCOM_0923460; VITISV_027395;

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	amino acid binding	GO:0016597	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	MATH	IPR002083	-	-
Sma3	Amino acid-binding ACT	IPR002912	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	TRAF-type	IPR013322	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G25320.1	TRAF-like family protein chr2:10781951-10788065 REVERSE LENGTH=1673	2.0e-20	90%
RefSeq	Arabidopsis thaliana	NP_180104.3	TRAF-like protein [Arabidopsis thaliana]	3.0e-20	90%
RefSeq	Populus trichocarpa	XP_002308674.1	predicted protein [Populus trichocarpa]	3.0e-20	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8RS70

Fln msg: Distance to subject end: 929 aas, your sequence is shorter than subject: 42 - 1590

Fln protein: FMKVSDMLDPDAGFLTRDTVVFVCEILDCCPWFEFSDLEVMV

Protein Length: 43

Fln nts: AATTCATGAAAGTCTCGGACATGCTGGATCCAGATGCAGGGTTCCTTACCCGTGACACAGTTGTATTTGTTTGTGAGATTCTGGATTGTTGTCCCTGGTTTGAGTTTTCTGATCTTGAGGTAATGGTTT

Fln Alignment:

AllPine_a_c47776___FMKVSDMLDPDAGFLTRDTVVFVCEILDCCPWFEFSDLEVMV
D8RS70________________FMKVSDMVEPDGGFMMRDTIVFVCEILDCCPWFEFSDLEVLV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain