SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene113358

Length: 180 nt

UniGene Fasta

>sp_v3.0_unigene113358
AGATAGTGGAGTGTAATGCCCTTCCCATCTTAATTTTAATGCTGCGATCTGAATCTGTCAGCATTCACTCTGAAGCAGTAGGTGTTATTGGAAATCTGGTGCATTCTTCTGCAAACATAAAGAGAGAGGTTATTCTTGCTGGAGCCCTTTAACCAGTTATTGGACTCTTGAGTTCAAGGT

Ace file of the UniGene sp_v3.0_unigene113358

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ARM repeat protein interacting with ABF2 [Arabidopsis thaliana] sp\|B9DHT4.2\|ARIA_ARATH RecName: Full=ARM REPEAT PROTEIN INTERACTING WITH ABF2; Short=ARIA gb\|AED92686.1\| ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]	-	-	2.0e-16	79%
FL-Next	sp=ARM REPEAT PROTEIN INTERACTING WITH ABF2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%

Source	Gene names
Sma3	ABAP1; At5g13060; At5g19330; CHLREDRAFT_140706; GSVIVT00019944001; GSVIVT00023713001; MICPUCDRAFT_29724; MICPUN_66240; OSTLU_27814; Os05g0398100; OsI_19876; OsJ_18462; Ot16g01790; P0605G01.6; PHYPADRAFT_106476; PHYPADRAFT_106616; POPTRDRAFT_1085349; POPTR

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	DNA replication preinitiation complex	GO:0031261	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	DNA-dependent DNA replication	GO:0006261	Biological Process	-
Sma3	regulation of cell proliferation	GO:0042127	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	BTB/POZ	IPR013069	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G19330.1	ARIA ARM repeat protein interacting with ABF2 chr5:6508095-6512701 REVERSE LENGTH=710	1.0e-21	79%
RefSeq	Arabidopsis thaliana	NP_197434.1	ARM repeat protein interacting with ABF2 [Arabidopsis thaliana]	1.0e-21	79%
RefSeq	Populus trichocarpa	XP_002314713.1	predicted protein [Populus trichocarpa]	1.0e-22	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: B9DHT4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 416 aas, your sequence is shorter than subject: 50 - 710

Fln protein: IVECNALPILILMLRSESVSIHSEAVGVIGNLVHSSANIKREVILAGAL*

Protein Length: 51

Fln nts: AGATAGTGGAGTGTAATGCCCTTCCCATCTTAATTTTAATGCTGCGATCTGAATCTGTCAGCATTCACTCTGAAGCAGTAGGTGTTATTGGAAATCTGGTGCATTCTTCTGCAAACATAAAGAGAGAGGTTATTCTTGCTGGAGCCCTTTAACCAGTTATTGGACTCTTGAGTTCAAGGT

Fln Alignment:

AllPine_a_c47549___IVECNALPILILMLRSESVSIHSEAVGVIGNLVHSSANIKREVILAGAL*PVIGLLSS
B9DHT4________________IVECNALPTLILMLGSEDAAIHYEAVGVIGNLVHSSPHIKKEVLTAGALQPVIGLLSS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain