SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene112854

Length: 293 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene112854
TGGGAACCATTTGTATGCCATGAAAGTCGTGAACAAACAGGTTTTGAGTTACAGGAATAAGCTGCACAGAGCAGAGATGGAGAAACAGATCTTGTCCATGCTTGATCACCCGTTCCTTCCTACACTTTATGCTCATTTTGATGCCTCACAGTATTCTTTTATAGTAATGGAATATTGCCCAGGAGGTGACTTGCATTCTCTGCGCCATAAACAACCAGGAAGACGATTCAGTCTGAGATCTGCAAGGTTCTATGTAGCCGAGGTGCTTCTGGCATTGGAGTATCTACACATGA

Ace file of the UniGene sp_v3.0_unigene112854 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein kinase PINOID n=3 Tax=Brassicaceae RepID=O64682_ARATH	-	-	5.0e-35	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Serine/threonine protein kinase, putative	-	-	1.291e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific serine/threonine protein kinase.	EC:2.7.11.1	-	1.887e-19	-
Sma3	Protein kinase C.	EC:2.7.11.13	-	5.718e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Phosphatidylinositol signaling system	04070		5.718e-12	%

Source	Gene names
Sma3	AGC1-10; AT4g26610; ATPK64; Adi3; At1g16440; At1g53700; At1g79250; At2g26700; At2g34650; At2g36350; At2g44830; At3g12690; At3g14370; At3g27580; At3g44610; At3g52890; At4g26610; At5g03640; At5g40030; At5g47750; At5g55910; At5g58140; B1026E06.38; B1066D09.2

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	G-protein coupled photoreceptor activity	GO:0008020	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	blue light photoreceptor activity	GO:0009882	Molecular Function	-
Sma3	FMN binding	GO:0010181	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	sensory perception	GO:0007600	Biological Process	-
Sma3	phototropism	GO:0009638	Biological Process	-
Sma3	auxin mediated signaling pathway	GO:0009734	Biological Process	-
Sma3	chloroplast relocation	GO:0009902	Biological Process	-
Sma3	auxin polar transport	GO:0009926	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	negative regulation of anion channel activity by blue light	GO:0010362	Biological Process	-
Sma3	protein-chromophore linkage	GO:0018298	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	root hair initiation	GO:0048766	Biological Process	-
Sma3	root hair elongation	GO:0048767	Biological Process	-
Sma3	cotyledon development	GO:0048825	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Phytochrome	IPR001294	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	GAF domain	IPR003018	-	-
Sma3	Domain of unknown function DUF591	IPR007649	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Phytochrome, central region	IPR013515	-	-
Sma3	Phytochrome chromophore binding site	IPR013516	-	-
Sma3	PAS fold-2	IPR013654	-	-
Sma3	PAS fold-3	IPR013655	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Phytochrome chromophore attachment domain	IPR016132	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G34650.1	PID, ABR Protein kinase superfamily protein chr2:14589934-14591557 REVERSE LENGTH=438	4.06377e-44	76%
RefSeq	Arabidopsis thaliana	NP_181012.1	protein kinase-like protein [Arabidopsis thaliana]	5.04467e-44	76%
RefSeq	Populus trichocarpa	XP_002322241.1	predicted protein [Populus trichocarpa]	1.99993e-41	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV39

Fln msg: Distance to subject end: 290 aas, your sequence is shorter than subject: 97 - 492

Fln protein: GNHLYAMKVVNKQVLSYRNKLHRAEMEKQILSMLDHPFLPTLYAHFDASQYSFIVMEYCPGGDLHSLRHKQPGRRFSLRSARFYVAEVLLALEYLHM

Protein Length: 98

Fln nts: TGGGAACCATTTGTATGCCATGAAAGTCGTGAACAAACAGGTTTTGAGTTACAGGAATAAGCTGCACAGAGCAGAGATGGAGAAACAGATCTTGTCCATGCTTGATCACCCGTTCCTTCCTACACTTTATGCTCATTTTGATGCCTCACAGTATTCTTTTATAGTAATGGAATATTGCCCAGGAGGTGACTTGCATTCTCTGCGCCATAAACAACCAGGAAGACGATTCAGTCTGAGATCTGCAAGGTTCTATGTAGCCGAGGTGCTTCTGGCATTGGAGTATCTACACATGA

Fln Alignment:

AllPine_a_c46915___YAMKVVNKQVLSYRNKLHRAEMEKQILSMLDHPFLPTLYAHFDASQYSFIVMEYCPGGDLHSLRHKQPGRRFSLRSARFYVAEVLLALEYLHM
A9NV39________________FAIKAMDKKALTSRNKLMRAETEREILETLDHPFLPTLYAHLDEPQLSCLVMEFCPGGDLHVLRQRQPGKRFRDHAARFYASEVLLALEYLHM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain