SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene111117

Length: 392 nt

UniGene Fasta

>sp_v3.0_unigene111117
GAAGTGATTCCAAAATATTTCCAAAATAAATTTGCTCTCACTAAATTCACTGTTATTGTCAGAAATTAACTGTTGAACTGATTGGGCATGACAGACGCCAGGTCTAAATGTCATCTCAGAGTACATTATAGGTTATATATACCCGGGCAGACCAGTTGCAAACATTTGTTTCAAGGTGTATGGTTATATTAGCATGCTTCAAGCCCTGACATTCTTGCAAGATTTTAAACTGGGGCATTATATGAAAATCCCTCCACGAGCCATGTTCATTGCGCAGGTACTGAATCTCTGAAATCCTCCATATCCGTTTCTTGAGTTCCATACAACCAATTCAAGCCATATATATATCATCTAATTTCTTGCAGATAGTGGGCACAGCGATAGCAGCGATA

Ace file of the UniGene sp_v3.0_unigene111117

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam03169, OPT, OPT oligopeptide transporter protein	-	-	7.0e-24	49%
FL-Next	sp=Oligopeptide transporter 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Sma3	Oligopeptide transporter OPT family	-	-	4.158e-31	-

Source	Gene names
Sma3	12.t00046; At1g09930; At4g10770; At4g16370; At4g26590; At4g27730; At5g53510; At5g53520; At5g55930; At5g64410; B1053A04.20-1; F21M12.32; FCAALL.72; GSVIVT00000539001; GSVIVT00004656001; GSVIVT00004853001; GSVIVT00005733001; GSVIVT00008168001; GSVIVT0001207

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oligopeptide transporter activity	GO:0015198	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	protein transport	GO:0015031	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tetrapeptide transporter, OPT1/isp4	IPR004648	-	-
Sma3	Oligopeptide transporter OPT superfamily	IPR004813	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Deoxyribonuclease, TatD-related, conserved site	IPR018228	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G10770.1	ATOPT7, OPT7 oligopeptide transporter 7 chr4:6628646-6632517 REVERSE LENGTH=766	1.0e-31	82%
RefSeq	Arabidopsis thaliana	NP_192815.1	oligopeptide transporter 7 [Arabidopsis thaliana]	1.0e-31	82%
RefSeq	Populus trichocarpa	XP_002303684.1	oligopeptide transporter OPT family [Populus trichocarpa]	5.0e-32	84%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O82485

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 164 aas, your sequence is shorter than subject: 97 - 766

Fln protein: K*FQNISKINLLSLNSLLLSEINC*TDWA*QTPGLNVISEYIIGYIYPGRPVANICFKVYGYISMLQALTFLQDFKLGHYMKIPPRAMFIAQVLNL*

Protein Length: 98

Fln nts: GAAGTGATTCCAAAATATTTCCAAAATAAATTTGCTCTCACTAAATTCACTGTTATTGTCAGAAATTAACTGTTGAACTGATTGGGCATGACAGACGCCAGGTCTAAATGTCATCTCAGAGTACATTATAGGTTATATATACCCGGGCAGACCAGTTGCAAACATTTGTTTCAAGGTGTATGGTTATATTAGCATGCTTCAAGCCCTGACATTCTTGCAAGATTTTAAACTGGGGCATTATATGAAAATCCCTCCACGAGCCATGTTCATTGCGCAGGTACTGAATCTCTGAAATCCTCCATATCCGTTTCTTGAGTTCCATACAACCAATTCAAGCCATATATATATCATCTAATTTCTTGCAGATAGTGGGCACAGCGATAGCAGCGATA

Fln Alignment:

AllPine_a_c44790___QTPGLNVISEYIIGYIYPGRPVANICFKVYGYISMLQALTFLQDFKLGHYMKIPPRAMFIAQVL
O82485________________QAPGLNIITEYIIGYIYPGYPVANMCFKVYGYISMQQAITFLQDFKLGHYMKIPPRTMFMAQIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain