SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene110631

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene110631
GGTTTCAAGTCCGATTCACATGAGAAAACTTTGGAAAAGGGAAGAGAAGAGATAGAAATTATTGCAGAAAGCCTGTCTGTTGGTGCCAGGGAGGATTCTGTTAATGCAGGGCATCGGTTATACATAATTGCAGTTGAACGCAACTTTACCAGAGGTAGACGGACAAAGCAAGTTGCAGCTGCCTGTCTTTATATCGTGTGTCGGCAAGAAC

Ace file of the UniGene sp_v3.0_unigene110631

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription factor IIB (ISS) [Ostreococcus tauri] emb\|CAL56498.1\| transcription factor IIB (ISS) [Ostreococcus tauri]	-	-	4.0e-18	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	Gene names
Sma3	MICPUCDRAFT_48092; MICPUN_82380; OSTLU_36784; OSTLU_41529; Os05g0305100; OsI_19387; OsJ_17983; Ot13g01700; PHATRDRAFT_30925;

Source	GOs	Term	Type	Identity
Sma3	transcription factor complex	GO:0005667	Cellular Component	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription initiation, DNA-dependent	GO:0006352	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	translational initiation	GO:0006413	Biological Process	-
Sma3		GO:0045941	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3		IPR006670	-	-
Sma3	Brf1-like TBP-binding	IPR011665	-	-
Sma3	Zinc finger, TFIIB-type	IPR013137	-	-
Sma3	Transcription factor TFIIB, cyclin-related	IPR013150	-	-
Sma3	Cyclin-like	IPR013763	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002314140.1	predicted protein, partial [Populus trichocarpa]	4.0e-13	51%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP4

Fln msg: Distance to subject end: 600 aas, your sequence is shorter than subject: 70 - 746

Fln protein: GFKSDSHEKTLEKGREEIEIIAESLSVGAREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQE

Protein Length: 71

Fln nts: GGTTTCAAGTCCGATTCACATGAGAAAACTTTGGAAAAGGGAAGAGAAGAGATAGAAATTATTGCAGAAAGCCTGTCTGTTGGTGCCAGGGAGGATTCTGTTAATGCAGGGCATCGGTTATACATAATTGCAGTTGAACGCAACTTTACCAGAGGTAGACGGACAAAGCAAGTTGCAGCTGCCTGTCTTTATATCGTGTGTCGGCAAGAAC

Fln Alignment:

AllPine_a_c44185___GFKSDSHEKTLEKGREEIEIIAESLSVGAREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQE
B8LQP4________________GFKSDSHEKTLEKGREEIEIIAESLSVSGREDSVNAGHRLYIIAVERNFTRGRRTKQVAAACLYIVCRQE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain