SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109592

Length: 447 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene109592
CTGGTAGTCGTGTTATTGTTCACATTGATATGGATTGCTTCTTTGTATCAGTTGTGACCAAGAATCGTCCGGAACTAGATGGGAAACCTGTAGCTGTATGCCACTCTGATAATCCTGAAGGAACTGCTGAAATCTCTTCTGCAAACTATCCTGCTCGAGGCTATGGCATCAGGGCAGGAATGTTCGTTAGGGATGCAAAGGCTTTGTGCCCACATCTTGTTATTCTTCCTTACGATTTTGGAGCATATGAAGAGGTTGCTGATCAATTCTATGACATTCTGCACAAACACTGTAACAAAATACAAGTATTAAGCTGTGACGAGGCATATTTAGATATGACTGGTTCAGGTGATCCTGATCACACTGTATCAGCTATCAGAAACGAGGTATTTGATGTGACAAAATGCACTGCAAGTGCTGGGATTGCTGGAAATTTACTGATGGCTC

Ace file of the UniGene sp_v3.0_unigene109592 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	polymerase ATREV1-630 [Arabidopsis thaliana]	-	-	0.0	71%
FL-Next	Isoform 4 of DNA repair protein REV1 OS=Arabidopsis thaliana GN=REV1	-	-	0.0	71%

Source	Gene names
Sma3	AtREV1; GSVIVT00007707001; MICPUN_75899; OSTLU_25113; Os06g0691000; OsI_24262; OsJ_22448; Ot10g00650; P0532H03.8; P0661G04.41; PHYPADRAFT_171090; POPTRDRAFT_767640; RCOM_0810900; REV1; T19K24.14; VITISV_006020;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	acetyl-CoA carboxylase complex	GO:0009317	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	damaged DNA binding	GO:0003684	Molecular Function	-
Sma3	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	-
Sma3	acetyl-CoA carboxylase activity	GO:0003989	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Acetyl-CoA carboxylase, alpha subunit	IPR001095	-	-
Sma3	DNA-repair protein, UmuC-like	IPR001126	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Acetyl-coenzyme A carboxyltransferase, C-terminal	IPR011763	-	-
Sma3	DNA repair protein, Rev1	IPR012112	-	-
Sma3	DNA-repair protein, UmuC-like, N-terminal	IPR017963	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G44750.2	REV1, ATREV1 DNA-directed DNA polymerases chr5:18052669-18059581 FORWARD LENGTH=1105	71%
RefSeq	Arabidopsis thaliana	NP_199288.4	DNA repair protein REV1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002313880.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A3EWL3-4

Fln msg: Distance to subject end: 110 aas, your sequence is shorter than subject: 148 - 630

Fln protein: GSRVIVHIDMDCFFVSVVTKNRPELDGKPVAVCHSDNPEGTAEISSANYPARGYGIRAGMFVRDAKALCPHLVILPYDFGAYEEVADQFYDILHKHCNKIQVLSCDEAYLDMTGSGDPDHTVSAIRNEVFDVTKCTASAGIAGNLLMA

Protein Length: 149

Fln nts: CTGGTAGTCGTGTTATTGTTCACATTGATATGGATTGCTTCTTTGTATCAGTTGTGACCAAGAATCGTCCGGAACTAGATGGGAAACCTGTAGCTGTATGCCACTCTGATAATCCTGAAGGAACTGCTGAAATCTCTTCTGCAAACTATCCTGCTCGAGGCTATGGCATCAGGGCAGGAATGTTCGTTAGGGATGCAAAGGCTTTGTGCCCACATCTTGTTATTCTTCCTTACGATTTTGGAGCATATGAAGAGGTTGCTGATCAATTCTATGACATTCTGCACAAACACTGTAACAAAATACAAGTATTAAGCTGTGACGAGGCATATTTAGATATGACTGGTTCAGGTGATCCTGATCACACTGTATCAGCTATCAGAAACGAGGTATTTGATGTGACAAAATGCACTGCAAGTGCTGGGATTGCTGGAAATTTACTGATGGCTC

Fln Alignment:

AllPine_a_c42917___IVHIDMDCFFVSVVTKNRPELDGKPVAVCHSDNPEGTAEISSANYPARGYGIRAGMFVRDAKALCPHLVILPYDFGAYEEVADQFYDILHKHCNKIQVLSCDEAYLDMTGSGDPDHTV--SAIRNEVFDVTKCTASAGIAGNLLMA
A3EWL3-4______________IIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVRHAKDLCPQLVIVPYNFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDLSDVETEVLASTIRNEILETTGCSASAGIGGTMLMA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain