SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene109066

Length: 201 nt

UniGene Fasta

>sp_v3.0_unigene109066
ATGGGAACTAAATCTGAAGCTGTATATGATCAACTGGAGACTTCGGACTGGAAATGTTATCATTTCATCAAGTGATGGGAACAGATCTCCATCCCCTGAGCCTATACATAATAACTTGGGGATAAGAATCAATACAAGGGAGGCTAGAGCTAGAGAAAAGCTCATACAGGAAAGAGATATAATAATGGCAATGTTGAATGC

Ace file of the UniGene sp_v3.0_unigene109066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	splicing factor 1 [Arabidopsis thaliana] ref\|NP_851169.1\| splicing factor 1 [Arabidopsis thaliana] ref\|NP_001032055.1\| splicing factor 1 [Arabidopsis thaliana] dbj\|BAA97393.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAN13087.1\| unknown protein [	-	-	1.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	Gene names
Sma3	PHYPADRAFT_185832; PHYPADRAFT_189930;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G51300.1	splicing factor-related chr5:20849881-20852295 REVERSE LENGTH=804	2.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_199943.1	splicing factor 1 [Arabidopsis thaliana]	2.0e-13	50%
RefSeq	Populus trichocarpa	XP_002326610.1	predicted protein, partial [Populus trichocarpa]	6.0e-13	50%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Distance to subject end: 709 aas, your sequence is shorter than subject: 66 - 970

Fln protein: WELNLKLYMINWRLRTGNVIISSSDGNRSPSPEPIHNNLGIRINTREARAREKLIQERDIIMAMLN

Protein Length: 67

Fln nts: ATGGGAACTAAATCTGAAGCTGTATATGATCAACTGGAGACTTCGGACTGGAAATGTTATCATTTCATCAAGTGATGGGAACAGATCTCCATCCCCTGAGCCTATACATAATAACTTGGGGATAAGAATCAATACAAGGGAGGCTAGAGCTAGAGAAAAGCTCATACAGGAAAGAGATATAATAATGGCAATGTTGAATGC

Fln Alignment:

AllPine_a_c42252___WELNLKLYMINWRLRTGNVIISSSDGNRSPSPEPIHNNLGIRINTREARAREKLIQERDIIMAML
B8LRH8________________WQLKLMLFNINNRLKTGNVIGASGDGQRSPSPEPQYNNLGMRINTREIRARQKLMDERQMIIARL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain