SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108832

Length: 693 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene108832 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription initiation factor tfiid, putative n=1 Tax=Ricinus communis RepID=B9S9F7_RICCO	-	-	6.0e-15	68%
FL-Next	sp=Transcription initiation factor TFIID subunit 1-A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%
Sma3	Histone acetyltransferase	-	-	1.512e-06	-

Source	Gene names
Sma3	At1g32750; F6N18.13; GSVIVT00018562001; GTD1; HAC13; HAF1; HAF1501; HAF901; HAF902; Loc_Os06g43790; OJ1226_A12.6; Os06g0645700; OsI_23891; OsJ_22148; P0017B12.32; PHYPADRAFT_165727; POPTRDRAFT_718531; POPTRDRAFT_736035; RCOM_0884950; TAF1; TAF1A;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	DNA mediated transformation	GO:0009294	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Bromodomain	IPR001487	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	TAFII-230 TBP-binding	IPR009067	-	-
Sma3	Bromodomain, conserved site	IPR018359	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32750.1	HAF01, HAF1, HAC13, GTD1, TAF1 HAC13 protein (HAC13) chr1:11846385-11856261 REVERSE LENGTH=1919	6.0e-16	68%
RefSeq	Arabidopsis thaliana	NP_174552.1	transcription initiation factor TFIID subunit 1-A [Arabidopsis thaliana]	8.0e-16	68%
RefSeq	Populus trichocarpa	XP_002309876.1	histone acetyltransferase, partial [Populus trichocarpa]	6.0e-17	71%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain