SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108548

Length: 369 nt

UniGene Fasta

>sp_v3.0_unigene108548
TTTAGATCCCTTTGGTAACATTACTGATTCAACTATATGGGAGGTCCTTCAAAAGTGCCATATTAAGGACGCAGTGATAACAACTGGTGGCCTTGATACGCATGTAACAGAGGGAGGGGATTGTTTCTCCACTGGACAGCGTCAACTCTTATGTCTTGCACGTGCACTTCTCAAGTCTTCCAAGGTTTTGTGCCTAGATGAATGCACTGCAAATGTAGACCCACAAACTACATCATTACTCAAGGAGACTGTGGCCACAGAATGTAAAGGCATAACTGTAATAACAATAGCACACCGTATTAGTACCATTGCTAATATGGACCGTGTGCTCATCTTTGACCAAGGGACAATTGTGGAAGAGGGAAACCC

Ace file of the UniGene sp_v3.0_unigene108548

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative multidrug resistance-associated protein 7 n=2 Tax=Oryza sativa Japonica Group RepID=Q5SMN1_ORYSJ	-	-	1.0e-32	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	Multidrug resistance protein ABC transporter family	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.2e-26	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g07680; At2g34660; At3g13080; At3g13090; At3g13100; At3g59140; At3g60970; B1065G12.13; CHLREDRAFT_143900; EST1; EST2; EST4; F17J16.190; F20D22.11; F26G16.1; GSVIVT00002476001; GSVIVT00002478001; GSVIVT0000248

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G07680.1	ATMRP11, MRP11, ABCC13 multidrug resistance-associated protein 11 chr2:3514774-3522491 FORWARD LENGTH=1404	3.0e-35	64%
RefSeq	Arabidopsis thaliana	NP_178811.7	multidrug resistance-associated protein 11 [Arabidopsis thaliana]	4.0e-35	64%
RefSeq	Populus trichocarpa	XP_002304728.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	1.0e-37	63%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NSU0

Fln msg: Distance to subject end: 27 aas, W2: There is no M at the beginning,

Fln protein: LDPFGNITDSTIWEVLQKCHIKDAVITTGGLDTHVTEGGDCFSTGQRQLLCLARALLKSSKVLCLDECTANVDPQTTSLLKETVATECKGITVITIAHRISTIANMDRVLIFDQGTIVEEGN

Protein Length: 123

Fln nts: TTTAGATCCCTTTGGTAACATTACTGATTCAACTATATGGGAGGTCCTTCAAAAGTGCCATATTAAGGACGCAGTGATAACAACTGGTGGCCTTGATACGCATGTAACAGAGGGAGGGGATTGTTTCTCCACTGGACAGCGTCAACTCTTATGTCTTGCACGTGCACTTCTCAAGTCTTCCAAGGTTTTGTGCCTAGATGAATGCACTGCAAATGTAGACCCACAAACTACATCATTACTCAAGGAGACTGTGGCCACAGAATGTAAAGGCATAACTGTAATAACAATAGCACACCGTATTAGTACCATTGCTAATATGGACCGTGTGCTCATCTTTGACCAAGGGACAATTGTGGAAGAGGGAAACCC

Fln Alignment:

AllPine_a_c41543___LDTHVTEGGDCFSTGXXXXXXXXXXXXXXXXVLCLDECTANVDPQTTSLLKETVATECKGITVITIAHRISTIANMDRVLIFDQGTIVEEGN
A9NSU0________________LDSSVSDEGENWSAGQRQLLCLGRVLLRRNRILVLDEATASIDSATDALLQKVIRHEFSNCTVITIAHRVPTVIDSDMVLTLSDGKLAEYDN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain