SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene108463

Length: 453 nt

UniGene Fasta

>sp_v3.0_unigene108463
CCGCGGGCGATCCCAACTTAGGACCCTGTGCTTTTCTGCGATTATATAGTTCGAACTTAGGAAATTTGAACAGCATCAGCAAATGACGTCTTCTCGTCTTGTTGCGGCTGCCATTGCAGCGGGCAACTTTTTACAAGGATGGGACGGTGCTGCTATTGCTGGAGCTTTGTTATATATTAAGCCAGAGTTTCATCTGGAACATGCGCCAGCGATCGAGGGCCTGATAATATCTTTCAGTGTTATTGGAGCCCTCTGCAGCACATCGATAGCAGGACTTTTGGCTGACAAATATGGCAGGCGAACAGTCTTATTCATAGCCGGAGTTCTGTATTGGCTCGGTGGTTCTGGAATGGCTGTAACACCAAATATTTATGCACTCATTGCATTTCGCTTTGCGGTTGGCTGTGCCTATGGTTTATCTGCAACTTGTTGTTCCTCTTCTTATAGCCGAGA

Ace file of the UniGene sp_v3.0_unigene108463

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monosaccharide-sensing protein 3 [Arabidopsis thaliana] sp\|Q9SD00.1\|MSSP3_ARATH RecName: Full=Monosaccharide-sensing protein 3; AltName: Full=Sugar transporter MSSP3 emb\|CAB63013.1\| sugar transporter-like protein [Arabidopsis thaliana] emb\|CAD58693.1\| mon	-	-	1.0e-24	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Sma3	Hexose transporter, putative, expressed	-	-	2.532e-08	-

Source	Gene names
Sma3	At3g51490; At4g35300; F23E12.140; F26O13.130; GSVIVT00019321001; GSVIVT00036283001; LOC_Os10g39440; LOC_Os11g28610; MSSP2; MSSP3; OSJNBb0064P21.3; Os10g0539900; Os11g0475600; OsI_34495; OsI_36080; OsJ_32308; OsJ_33873; PHYPADRAFT_139633; PHYPADRAFT_154012

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	-
Sma3	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	-
Sma3	carbohydrate transport	GO:0008643	Biological Process	-
Sma3	transmembrane transport	GO:0055085	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51490.2	TMT3 tonoplast monosaccharide transporter3 chr3:19105018-19107562 REVERSE LENGTH=737	1.0e-29	51%
RefSeq	Arabidopsis thaliana	NP_190717.1	monosaccharide-sensing protein 3 [Arabidopsis thaliana]	1.0e-29	51%
RefSeq	Populus trichocarpa	XP_002328276.1	predicted protein, partial [Populus trichocarpa]	2.0e-30	52%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLI2

Fln msg: Distance to subject end: 442 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 123 - 589

Fln protein: MTSSRLVAAAIAAGNFLQGWDGAAIAGALLYIKPEFHLEHAPAIEGLIISFSVIGALCSTSIAGLLADKYGRRTVLFIAGVLYWLGGSGMAVTPNIYALIAFRFAVGCAYGLSATCCSSSYSR

Protein Length: 124

Fln nts: CCGCGGGCGATCCCAACTTAGGACCCTGTGCTTTTCTGCGATTATATAGTTCGAACTTAGGAAATTTGAACAGCATCAGCAA_-_ATGACGTCTTCTCGTCTTGTTGCGGCTGCCATTGCAGCGGGCAACTTTTTACAAGGATGGGACGGTGCTGCTATTGCTGGAGCTTTGTTATATATTAAGCCAGAGTTTCATCTGGAACATGCGCCAGCGATCGAGGGCCTGATAATATCTTTCAGTGTTATTGGAGCCCTCTGCAGCACATCGATAGCAGGACTTTTGGCTGACAAATATGGCAGGCGAACAGTCTTATTCATAGCCGGAGTTCTGTATTGGCTCGGTGGTTCTGGAATGGCTGTAACACCAAATATTTATGCACTCATTGCATTTCGCTTTGCGGTTGGCTGTGCCTATGGTTTATCTGCAACTTGTTGTTCCTCTTCTTATAGCCGAGA

Fln Alignment:

AllPine_a_c41418___VAAAIAAGNFLQGWDGAAIAGALLYIKPEFH-LEHAPAIEGLIISFSVIGALCSTSIAGLLADKYGRRTVLFIAGVLYWLGGSGMAVTPNIYALIAFRFAVGCAYGLSA
B8LLI2________________LALSAGLGGLLFGYDTGVISGALLYIRDDFEEVDHSTKLQETIVSMAVAGAIVGAAFGGWVNDRFGRRFALLLADSLFFLGAIIMAAAPNASVLISGRVFVGLGVGMAS

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
107			66	33	0.997464
112	33	66			0.997464
114	66	33			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain