SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107816

Length: 268 nt

UniGene Fasta

>sp_v3.0_unigene107816
AGATCCCGATGGGCCCAGGGCAACCCTCGTTGTCTGCCCGCCCTCCGTGCTTTCGAACTGGGTGGATCAGCTCGAGGAACACACTAAGCGGGGAAGCTTGAAAGTTTATCTATACCATGGAGGTGGTCGCATGAAGGAAGCAAACGAAATATCTAAATTTGATATTGTTCTGACAACCTATAGTACTCTTGGTTCAGAATTAAATAATCTGAGCTCACCTATCAAGGAGATCAAGTGGTTGAGAATAATTTTGGATGAGGCACATTTC

Ace file of the UniGene sp_v3.0_unigene107816

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SNF2-related; Zinc finger, RING-type; ATP-requiring DNA helicase RecQ [Medicago truncatula]	-	-	5.0e-25	61%
FL-Next	sp=Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	62%
Sma3	Chromatin remodeling complex subunit	-	-	1.462e-08	-

Source	Gene names
Sma3	At5g05130; CHR1531; CHR931; CHR946; CHR957; GSVIVT00023276001; MUG13.1; MtrDRAFT_AC157502g7v2; OJ1003_C06.108; Os07g0642400; OsI_27065; OsJ_25316; P0524G08.124; PHYPADRAFT_211797; POPTRDRAFT_255250; POPTRDRAFT_255263; POPTRDRAFT_418053; RCOM_0314440;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3		GO:0006350	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	von Willebrand factor, type C	IPR001007	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	HIP116, Rad5p N-terminal	IPR014905	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05130.1	DNA/RNA helicase protein chr5:1512173-1514918 FORWARD LENGTH=862	2.0e-30	62%
RefSeq	Arabidopsis thaliana	NP_196132.2	DNA/RNA helicase [Arabidopsis thaliana]	3.0e-30	62%
RefSeq	Populus trichocarpa	XP_002308876.1	chromatin remodeling complex subunit, partial [Populus trichocarpa]	4.0e-27	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FF61

Fln msg: Distance to subject end: 440 aas, your sequence is shorter than subject: 89 - 881

Fln protein: DPDGPRATLVVCPPSVLSNWVDQLEEHTKRGSLKVYLYHGGGRMKEANEISKFDIVLTTYSTLGSELNNLSSPIKEIKWLRIILDEAHF

Protein Length: 90

Fln nts: AGATCCCGATGGGCCCAGGGCAACCCTCGTTGTCTGCCCGCCCTCCGTGCTTTCGAACTGGGTGGATCAGCTCGAGGAACACACTAAGCGGGGAAGCTTGAAAGTTTATCTATACCATGGAGGTGGTCGCATGAAGGAAGCAAACGAAATATCTAAATTTGATATTGTTCTGACAACCTATAGTACTCTTGGTTCAGAATTAAATAATCTGAGCTCACCTATCAAGGAGATCAAGTGGTTGAGAATAATTTTGGATGAGGCACATTTC

Fln Alignment:

AllPine_a_c40309___RATLVVCPPSVLSNWVDQLEEHTKRGSLKVYLYHGGGRMKEANEISKFDIVLTTYSTLGSELNNLSSPIKEIKWLRIILDEAH
Q9FF61________________KTTLIVCPPSVISAWITQLEEHTVPGILKVYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPVKKMEWLRIILDEAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain