SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107667

Length: 160 nt

UniGene Fasta

>sp_v3.0_unigene107667
TGAATTGGAAAGCAGTCAAGGATGGTAATCCAGATTCACAAGAACAGGAGAATGCAGAGGGTTCAATTCGTTATGAAAGTATTAAAAATCTGTCTAGGAGTACAGTTTCTAAAGATAGATATGCTGACATTCCAAACGGTGATAGTCAAACTGGTGCGGT

Ace file of the UniGene sp_v3.0_unigene107667

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	3.0e-15	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor TFIIB	IPR000812	-	-
Sma3		IPR006670	-	-
Sma3	Brf1-like TBP-binding	IPR011665	-	-
Sma3	Zinc finger, TFIIB-type	IPR013137	-	-
Sma3	Transcription factor TFIIB, cyclin-related	IPR013150	-	-
Sma3	Cyclin-like	IPR013763	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQP4

Fln msg: Distance to subject end: 276 aas, your sequence is shorter than subject: 52 - 746

Fln protein: NWKAVKDGNPDSQEQENAEGSIRYESIKNLSRSTVSKDRYADIPNGDSQTGA

Protein Length: 53

Fln nts: TGAATTGGAAAGCAGTCAAGGATGGTAATCCAGATTCACAAGAACAGGAGAATGCAGAGGGTTCAATTCGTTATGAAAGTATTAAAAATCTGTCTAGGAGTACAGTTTCTAAAGATAGATATGCTGACATTCCAAACGGTGATAGTCAAACTGGTGCGGT

Fln Alignment:

AllPine_a_c40074___NWKAVKDGNPDSQEQENAEGSIRYESIKNLSRSTVSKDRYADIPNGDSQTGA
B8LQP4________________NQKAVQDGNPGSQEQENAEGSNRYENIKNLYRSTASKDGYADSPNGDSQIGA

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
119	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain