SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107120

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene107120
TGAGCAGTAATACCCTATATGATGATATGAGGATTGTGATTAAAGGGTATGAATATACTCTTACATATGTGATGGAGACAAATACTATATTAGATTTGTCTAGCAATAATCTCGTTGGGAAAATACCTGAAAGTATAGGAAATCTGAGCAGCCTAAGGTTGCTAAATTTGTCAAGAAATAAGCTTGAAGGACAAATCAGTGCATCTCTTAGTCAGATATCTACATTGGAGGAATTAGATTTATCTAAAAATAACTTGGCAGGAAACATTCCTCAAGAATTTTCTAAACTAACCAAATTGGCATCCTTAAATGTCTCATCTAATAGACTGTGTGGACCAATCCCCAAAGG

Ace file of the UniGene sp_v3.0_unigene107120 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Verticillium wilt disease resistance protein n=14 Tax=Solanum RepID=C4NAS5_SOLLC	-	-	1.0e-16	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	Ve resistance gene analog	-	-	2.211e-20	-

Source	Gene names
Sma3	9DC1; 9DC2; 9DC3; AT2G16250; AT4g04220; AT4g13910; At1g74180; At2g16250; At3g23010; Cf-4; Cf-4A; Cf-9; F18A5.300; F9E11.6; GSVIVT00000950001; GSVIVT00001339001; GSVIVT00001345001; GSVIVT00001812001; GSVIVT00002857001; GSVIVT00010513001; GSVIVT00010516001;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G40170.1	AtRLP54, RLP54 receptor like protein 54 chr5:16065179-16067557 REVERSE LENGTH=792	1.0e-19	47%
RefSeq	Arabidopsis thaliana	NP_198833.1	receptor like protein 54 [Arabidopsis thaliana]	2.0e-19	47%
RefSeq	Populus trichocarpa	XP_002323000.1	predicted protein [Populus trichocarpa]	9.0e-20	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 99 aas, your sequence is shorter than subject: 115 - 818

Fln protein: SSNTLYDDMRIVIKGYEYTLTYVMETNTILDLSSNNLVGKIPESIGNLSSLRLLNLSRNKLEGQISASLSQISTLEELDLSKNNLAGNIPQEFSKLTKLASLNVSSNRLCGPIPK

Protein Length: 116

Fln nts: TGAGCAGTAATACCCTATATGATGATATGAGGATTGTGATTAAAGGGTATGAATATACTCTTACATATGTGATGGAGACAAATACTATATTAGATTTGTCTAGCAATAATCTCGTTGGGAAAATACCTGAAAGTATAGGAAATCTGAGCAGCCTAAGGTTGCTAAATTTGTCAAGAAATAAGCTTGAAGGACAAATCAGTGCATCTCTTAGTCAGATATCTACATTGGAGGAATTAGATTTATCTAAAAATAACTTGGCAGGAAACATTCCTCAAGAATTTTCTAAACTAACCAAATTGGCATCCTTAAATGTCTCATCTAATAGACTGTGTGGACCAATCCCCAAAGG

Fln Alignment:

AllPine_a_c39223___SSNTLYDDMRIVIKGYEYTLTYVMETNTILDLSSNNLVGKIPESIGXXXXXXXXXXXXNKLEGQISASLSQISTLEELDLSKNNLAGNIPQEFSKLTKLASLNVSSNRLCGPIP
B8LQX6________________SSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain