SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene107012

Length: 231 nt

UniGene Fasta

>sp_v3.0_unigene107012
GGACTCCAGTTAGAAGTTACAAGGAAATTGGAACTTTCCAGATACAAAAGGATCCATCAGCAAGTCAAAGCAACCAGGAACCATGTTCACCTAGGATGGCCAAGTCACCATCTCTTCAAAGACAACATGGGGCTCATGTCTTAAGACATTTTGAAACTAGCTACAATACTCAGGATTCACCTAAGCTACAGAGTCCACCATCTGAAAAAACAATAGAAAATGGGATGCCTT

Ace file of the UniGene sp_v3.0_unigene107012

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MDR-like ABC transporter [Oryza sativa Japonica Group] dbj\|BAD87033.1\| putative multidrug resistance protein 1 homolog [Oryza sativa Japonica Group] dbj\|BAD87850.1\| putative multidrug resistance protein 1 homolog [Oryza sativa Japonica Group]	-	-	7.0e-16	51%
FL-Next	sp=ABC transporter B family member 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Sma3	Multidrug/pheromone exporter, MDR family, ABC transporter family	-	-	6.066e-07	-

Source	Gene names
Sma3	GSVIVT00018550001; LOC_Os03g17180; Os03g0280000; OsI_11025; OsJ_10362; POPTRDRAFT_765401; POPTRDRAFT_833831; VITISV_002627;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55320.1	PGP20 P-glycoprotein 20 chr3:20507391-20513393 REVERSE LENGTH=1408	1.0e-17	54%
RefSeq	Arabidopsis thaliana	NP_191092.1	ABC transporter B family member 20 [Arabidopsis thaliana]	2.0e-17	54%
RefSeq	Populus trichocarpa	XP_002311144.1	multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa]	4.0e-21	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M3B9

Fln msg: Distance to subject end: 676 aas, your sequence is shorter than subject: 76 - 1408

Fln protein: TPVRSYKEIGTFQIQKDPSASQSNQEPCSPRMAKSPSLQRQHGAHVLRHFETSYNTQDSPKLQSPPSEKTIENGMP

Protein Length: 77

Fln nts: GGACTCCAGTTAGAAGTTACAAGGAAATTGGAACTTTCCAGATACAAAAGGATCCATCAGCAAGTCAAAGCAACCAGGAACCATGTTCACCTAGGATGGCCAAGTCACCATCTCTTCAAAGACAACATGGGGCTCATGTCTTAAGACATTTTGAAACTAGCTACAATACTCAGGATTCACCTAAGCTACAGAGTCCACCATCTGAAAAAACAATAGAAAATGGGATGCCTT

Fln Alignment:

AllPine_a_c39073___PVRSYKEIGTFQIQKDPSASQSNQEPCSPRMAKSPSLQRQHGAHVLRHFETSYNTQDSPKLQSPPSEKTIENGM
Q9M3B9________________PVRNYKESAVFEVERDSSAGCGVQEPSSPKMIKSPSLQR--GSGVFRPQELCFDTEESPKAHSPASEKTGEDGM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
44	66			33	0.997476
45		66	33		0.997476
46	66			33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain