SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106887

Length: 499 nt

UniGene Fasta

>sp_v3.0_unigene106887
TTACAGGTGGGATTCCCGAATCATATGGGGCCTGTTCAACGCTGAATCGCTTTCGAGTAAACGATAACAATCTGACAGGCACGGTACCATCTGGTGTCTGGGGATTACCCCATGCCACCATAATTGATTTGAGTTTCAATAGTTTTGAGGGAGAGTAGATGCAAGCAGTAATAGGCTATCTGGTGAATTGCCTGCTGAAATTGGAAATTTGAGCATGCTGAACAGCCTGCGTTTGCAACATAACATGCTTTCTGGTCCTATACCTCAAACATTAGGGCTCTGTGTGGCTCTTGCCGAAATAAACCTTGCTGGAAATACACTGGACGGTACTATTCCTGCATCATTGGGATCCATACAAGTCCTCAATTCTCTGAACCTCTCCAACAATCAACTCAGTGGTCAGATTCCAACGAGCCTTTCTTCATTGAAGCTCAGCTTGCTTGATTTTTCCAACAATCAGTTGACAGGACCTGTGCCGGCGCAGCTGATTTACCTGGCA

Ace file of the UniGene sp_v3.0_unigene106887

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9S7S2_RICCO	-	-	6.0e-34	39%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	30%
Sma3	Leucine Rich Repeat family protein, expressed	-	-	3.258e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	2.29e-06	-

Source	Gene names
Sma3	At1g09970; At1g09970/F21M12.36; At1g72180; At3g19700; BRI1; CLV; CURL3; F21M12.36; FLS2; GSVIVT00002006001; GSVIVT00015034001; GSVIVT00020456001; GSVIVT00024827001; GSVIVT00038540001; IKU2; LOC_Os11g07060; LOC_Os11g07140; LOC_Os11g07230; LOC_Os11g12530; L

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	aminopeptidase activity	GO:0004177	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	epidermis development	GO:0008544	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	embryo development	GO:0009790	Biological Process	-
Sma3	endosperm development	GO:0009960	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Intradiol ring-cleavage dioxygenase, C-terminal	IPR000627	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Carotenoid oxygenase	IPR004294	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G09970.2	LRR XI-23, RLK7 Leucine-rich receptor-like protein kinase family protein chr1:3252408-3255428 FORWARD LENGTH=977	4.0e-32	51%
RefSeq	Arabidopsis thaliana	NP_172468.3	leucine-rich receptor-like protein kinase [Arabidopsis thaliana]	5.0e-32	51%
RefSeq	Populus trichocarpa	XP_002313944.1	predicted protein [Populus trichocarpa]	1.0e-34	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: Separated hits, possible frame ERROR between 152 and 161, Distance to subject end: 402 aas, your sequence is shorter than subject: 166 - 998

Fln protein: TGGIPESYGACSTLNRFRVNDNNLTGTVPSGVWGLPHATIIDLSFNSFExxxxASSNRLSGELPAEIGNLSMLNSLRLQHNMLSGPIPQTLGLCVALAEINLAGNTLDGTIPASLGSIQVLNSLNLSNNQLSGQIPTSLSSLKLSLLDFSNNQLTGPVPAQLIYLA

Protein Length: 167

Fln nts: TTACAGGTGGGATTCCCGAATCATATGGGGCCTGTTCAACGCTGAATCGCTTTCGAGTAAACGATAACAATCTGACAGGCACGGTACCATCTGGTGTCTGGGGATTACCCCATGCCACCATAATTGATTTGAGTTTCAATAGTTTTGAGGGxxxxxxxxxTGCAAGCAGTAATAGGCTATCTGGTGAATTGCCTGCTGAAATTGGAAATTTGAGCATGCTGAACAGCCTGCGTTTGCAACATAACATGCTTTCTGGTCCTATACCTCAAACATTAGGGCTCTGTGTGGCTCTTGCCGAAATAAACCTTGCTGGAAATACACTGGACGGTACTATTCCTGCATCATTGGGATCCATACAAGTCCTCAATTCTCTGAACCTCTCCAACAATCAACTCAGTGGTCAGATTCCAACGAGCCTTTCTTCATTGAAGCTCAGCTTGCTTGATTTTTCCAACAATCAGTTGACAGGACCTGTGCCGGCGCAGCTGATTTACCTGGCA

Fln Alignment:

AllPine_a_c38897___TGGIPESYGACSTLNRFRVNDNNLTGTVPSGVWGLPHATIIDLSFNSFEGxxxASSNRLSGELPAEIGNLSMLNSLRLQHNMLSGPIPQTLGLCVALAEINLAGNTLDGTIPASLGSIQVXXXXXXXXXXXXGQIPTXXXXXXXXXXXXXNNQLTGPVP
Q19AV8________________SGPIPPAFGQLLELQVLNLVFNLLNTTIPPFLGNLPNLLQFNLAYNPFTGxxxASNNFLTGALPPSVGKLQQLGKLDLSNNQLSGELPAEISSCKQLGEINLSKNQFSGSIPASVGTLPVLNYLDLSDNLLTGLIPSEFGNLKLNTFDVSNNRLSGAVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain