SustainPineDB

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Assembly info
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SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106326

Length: 106 nt

UniGene Fasta

>sp_v3.0_unigene106326
TTTCTATGGGACATTACCAAGGCGAGAAAATTGTTTGATGCTGCAATTGTAGCAGATAAGAAACATGTTGCAGCATGGCATGGTTGGGCTTTCTTGGAAATCAATG

Ace file of the UniGene sp_v3.0_unigene106326

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein high chlorophyll fluorescent 107 [Arabidopsis thaliana] gb\|AAM13111.1\| unknown protein [Arabidopsis thaliana] gb\|AAP37764.1\| At3g17040 [Arabidopsis thaliana] gb\|AEE75897.1\| protein high chlorophyll fluorescent 107 [Arabidopsis thaliana]	-	-	6.0e-07	75%
FL-Next	tr=Protein high chlorophyll fluorescent 107; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	75%
Sma3	Similarity to O-linked GlcNAc transferase	-	-	8.285e-06	-

Source	Gene names
Sma3	At3g17040;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	RNA processing	GO:0006396	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA-processing protein, HAT helix	IPR003107	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide TPR2	IPR013105	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G17040.1	HCF107 high chlorophyll fluorescent 107 chr3:5809378-5812605 REVERSE LENGTH=652	5.0e-11	75%
RefSeq	Arabidopsis thaliana	NP_001189914.1	protein high chlorophyll fluorescent 107 [Arabidopsis thaliana]	7.0e-11	75%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4J3Z3

Fln msg: Distance to subject end: 369 aas, your sequence is shorter than subject: 35 - 618

Fln protein: FLWDITKARKLFDAAIVADKKHVAAWHGWAFLEIN

Protein Length: 36

Fln nts: TTTCTATGGGACATTACCAAGGCGAGAAAATTGTTTGATGCTGCAATTGTAGCAGATAAGAAACATGTTGCAGCATGGCATGGTTGGGCTTTCTTGGAAATCAATG

Fln Alignment:

AllPine_a_c38113___LWDITKARKLFDAAIVADKKHVAAWHGWAFLEI
F4J3Z3________________LGNVRRARELFDAATVADKKHVAAWHGWANLEI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain