SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene106051

Length: 203 nt

UniGene Fasta

>sp_v3.0_unigene106051
CAGATAGATGCTATTTGCAAGAGCGAATATTGAACATCTCCAAAGGCCCTGCTGTTCGTGCGTTGCGTGCACAAACTGATAAACGTGAATATGCTTCTGAGATGAAGCATGTTTTGGAAAGCACTGCAAACCTTTACATCAGAGAGGCAATGGCAACAGAACTGCTGATTGGAAAGAATGATAATGTGGAAGGAGTACATACA

Ace file of the UniGene sp_v3.0_unigene106051

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glucose-inhibited division A family protein [Musa acuminata]	-	-	4.0e-23	79%
FL-Next	tr=Putative uncharacterized protein; Oryza sativa subsp. indica (Rice).	-	-	0.0	82%

Source	Gene names
Sma3	At2g13440; CHLREDRAFT_38547; GIDA1; GSVIVT00006007001; MA4_82I11.48; MBP_81C12.46; MICPUCDRAFT_45597; MICPUN_80021; OSTLU_40972; Os01g0960300; OsI_05293; OsI_05295; OsJ_04841; Ot06g01160; P0401G10.24; PHYPADRAFT_112486; RCOM_1189230;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	endonuclease activity	GO:0004519	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	tRNA wobble uridine modification	GO:0002098	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	tRNA processing	GO:0008033	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Glucose-inhibited division protein A-related	IPR002218	-	-
Sma3	Glucose-inhibited division protein A	IPR004416	-	-
Sma3	Protein Transporter, Pam16	IPR005341	-	-
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G13440.1	glucose-inhibited division family A protein chr2:5593270-5598296 REVERSE LENGTH=723	4.0e-29	74%
RefSeq	Arabidopsis thaliana	NP_178974.1	glucose-inhibited division family A protein [Arabidopsis thaliana]	6.0e-29	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B8A9K0

Fln msg: Distance to subject end: 103 aas, your sequence is shorter than subject: 67 - 305

Fln protein: DRCYLQERILNISKGPAVRALRAQTDKREYASEMKHVLESTANLYIREAMATELLIGKNDNVEGVHT

Protein Length: 68

Fln nts: CAGATAGATGCTATTTGCAAGAGCGAATATTGAACATCTCCAAAGGCCCTGCTGTTCGTGCGTTGCGTGCACAAACTGATAAACGTGAATATGCTTCTGAGATGAAGCATGTTTTGGAAAGCACTGCAAACCTTTACATCAGAGAGGCAATGGCAACAGAACTGCTGATTGGAAAGAATGATAATGTGGAAGGAGTACATACA

Fln Alignment:

AllPine_a_c37747___DRCYLQERILNISKGPAVRALRAQTDKREYASEMKHVLESTANLYIREAMATELLIGKNDNVEGVHT
B8A9K0________________DRCYLQKRVLNSSKGPAVRALRAQTDKREYAVEMKKVVESTQNLFIREAMATEVMIGQNDNVEGVRT

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
124		80		20	0.995493
162		75		25	0.996473
173	75			25	0.996473
175	75	25			0.996473
176			75	25	0.996473
177	75	25			0.996473
180		25	75		0.996473
182	25			75	0.996473
183	75	25			0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain