SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene105331

Length: 294 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene105331
GTGATGATGCAACGGTTCGAGTATGGGATCTTGTTGCTAAGAAGTGCATTTCTGTGCTGGAAAAGCATTTTTCTACTGTGACGAGTTTGGCAATCTCTGAAAATGGTTGGAATCTGCTCAGTGCTGGTAGAGATAAGGTTGTAAATATATGGGACCTGCGTGATTATCACTGCCGGGCAACAATACCGACATATGAACCACTAGAAGCTGTTTGTGTTCTGCCAACTGGTTCTAGGCTGGTGTCTGTTATGAACCAAAGCCGGGCATTGCCTGAAAATCAAAAGAAAAGTGGTG

Ace file of the UniGene sp_v3.0_unigene105331 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U3 small nucleolar RNA-associated protein, putative n=1 Tax=Ricinus communis RepID=B9S245_RICCO	-	-	5.0e-27	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%

Source	Gene names
Sma3	At5g16750; F5E19_90; GSVIVT00013990001; OSIGBa0142I02-OSIGBa0101B20.18; OSJNBa0009P12.21; Os04g0592700; OsI_17203; OsJ_15986; PHYPADRAFT_171598; POPTRDRAFT_573797; RCOM_1327280; VITISV_036512;

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	small-subunit processome	GO:0032040	Cellular Component	-
Sma3	phosphoenolpyruvate carboxykinase (ATP) activity	GO:0004612	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	gluconeogenesis	GO:0006094	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	embryonic pattern specification	GO:0009880	Biological Process	-
Sma3	cell division	GO:0051301	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Beta-lactamase, class-B, conserved site	IPR001018	-	-
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Small-subunit processome, Utp13	IPR013934	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G16750.1	TOZ Transducin family protein / WD-40 repeat family protein chr5:5504541-5509266 REVERSE LENGTH=876	3.0e-29	55%
RefSeq	Arabidopsis thaliana	NP_568338.2	transducin/WD40 domain-containing protein [Arabidopsis thaliana]	4.0e-29	55%
RefSeq	Populus trichocarpa	XP_002325374.1	predicted protein [Populus trichocarpa]	2.0e-31	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: Distance to subject end: 130 aas, your sequence is shorter than subject: 97 - 314

Fln protein: DDATVRVWDLVAKKCISVLEKHFSTVTSLAISENGWNLLSAGRDKVVNIWDLRDYHCRATIPTYEPLEAVCVLPTGSRLVSVMNQSRALPENQKKSG

Protein Length: 98

Fln nts: GTGATGATGCAACGGTTCGAGTATGGGATCTTGTTGCTAAGAAGTGCATTTCTGTGCTGGAAAAGCATTTTTCTACTGTGACGAGTTTGGCAATCTCTGAAAATGGTTGGAATCTGCTCAGTGCTGGTAGAGATAAGGTTGTAAATATATGGGACCTGCGTGATTATCACTGCCGGGCAACAATACCGACATATGAACCACTAGAAGCTGTTTGTGTTCTGCCAACTGGTTCTAGGCTGGTGTCTGTTATGAACCAAAGCCGGGCATTGCCTGAAAATCAAAAGAAAAGTGGTG

Fln Alignment:

AllPine_a_c36755___DDATVRVWDLVAKKCISVLEKHFSTVTSLAISENGWNLLSAGRDKVVNIWDLRDYHCRATIPTY-EPLEAVCVLPTGSRLVS
A9NPC1________________DDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTGKCLKVLPAHSDPVTAVHFNRDGSLIVS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
140	33		66		0.997459
141	33			66	0.997459
142		66		33	0.997459
143		66	33		0.997459
144		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain