SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104862

Length: 489 nt

UniGene Fasta

>sp_v3.0_unigene104862
ATGGGCATTGCCCAATTAATGTTGAGAACCTTAGTCAACCTGGCCAAATGCTTGTGGAGATATTGTATGAAGAAGAAGGCATCTTCTTGGAGATTGCTAATAACATACGTGAGTTGGGTTTGACCATACTGAAAGGTGTAATGGAAGTTAGAAATGGACACATTTGGGCTCGATTTGTTGTCGAGTCTGTCCGAGATATTCATAGGTTGGAAGTATTGTGGTCGCTTACACATATCCTCGAATCAGCTGCAAATAAGCGAGCAAACACAGGGATTTCCAACTGAGGTGCATGAGCATGGACTTAAAATACTGAAATCGTATCAGGGTATTTTCTTCCATGCAGCATATTCACTTGTGGACAATATGAAAGGCCTCAAGTGCTATTCAGCTATAGTCCCTGCATCAAGAAACCTTTGTATAAATTCAGTCAATGAATGATTTGGGTGTACATTTTTATGTATCAATGTGCAGTTCATGTTCAGGATATAC

Ace file of the UniGene sp_v3.0_unigene104862

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Transcription factor LHW; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%

Source	Gene names
Sma3	AT2G27230; At2g27230; GSVIVT00000548001; GSVIVT00007504001; GSVIVT00017515001; GSVIVT00021373001; LOC_Os11g06010; LOC_Os12g06330; MtrDRAFT_AC148290g20v2; MtrDRAFT_AC151522g33v2; Os01g0865600; Os02g0673500; Os11g0158500; Os12g0160400; OsI_04550; OsI_37555;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	transcription activator activity	GO:0016563	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	maintenance of root meristem identity	GO:0010078	Biological Process	-
Sma3	stele development	GO:0010479	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3		IPR001092	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G27230.1	LHW transcription factor-related chr2:11650895-11653840 FORWARD LENGTH=650	6.0e-20	51%
RefSeq	Arabidopsis thaliana	NP_001031430.1	transcription factor-related protein [Arabidopsis thaliana]	8.0e-20	51%
RefSeq	Populus trichocarpa	XP_002298267.1	predicted protein [Populus trichocarpa]	1.0e-24	61%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q9XIN0

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 17 aas, your sequence is shorter than subject: 94 - 650

Fln protein: GHCPINVENLSQPGQMLVEILYEEEGIFLEIANNIRELGLTILKGVMEVRNGHIWARFVVESVRDIHRLEVLWSLTHILESAANKRANTGISN*

Protein Length: 95

Fln nts: ATGGGCATTGCCCAATTAATGTTGAGAACCTTAGTCAACCTGGCCAAATGCTTGTGGAGATATTGTATGAAGAAGAAGGCATCTTCTTGGAGATTGCTAATAACATACGTGAGTTGGGTTTGACCATACTGAAAGGTGTAATGGAAGTTAGAAATGGACACATTTGGGCTCGATTTGTTGTCGAGTCTGTCCGAGATATTCATAGGTTGGAAGTATTGTGGTCGCTTACACATATCCTCGAATCAGCTGCAAATAAGCGAGCAAACACAGGGATTTCCAACTGA___GGTGCATGAGCATGGACTTAAAATACTGAAATCGTATCAGGGTATTTTCTTCCATGCAGCATATTCACTTGTGGACAATATGAAAGGCCTCAAGTGCTATTCAGCTATAGTCCCTGCATCAAGAAACCTTTGTATAAATTCAGTCAATGAATGATTTGGGTGTACATTTTTATGTATCAATGTGCAGTTCATGTTCAGGATATAC

Fln Alignment:

AllPine_a_c36068___CPINVENLSQPGQMLVEILYEEEGIFLEIANNIRELGLTILKGVMEVRNGHIWARFVVESVRDIHRLEVLWSLTHILESAANKRANT
Q9XIN0________________CPIVVEDINPPRIFQVEMLCEQRGFFLEIADWIRSLGLTILKGVIETRVDKIWARFTVEASRDVTRMEIFMQLVNILEQTMKCGGNS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
313			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain