SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104796

Length: 514 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104796
TGGTTTCTTTACCACAAGGTGCCATTGATGCAAGCATTGCTGGGTTGGCAATAACATATGGGCTGAACCTGAGTTCCTTGCAAGCCTGGATGATTTGGCTCTTATGTAATGTGGAGAACGAAGTTATTTCGGTGGAAAGGCTATTGCAGTATTCACATATTCCCAGCGAGGCACCCCTCGTCATAGAAGAGTCAAGGCCAAACTCTGATTGGCCAGTAAAAGGAACAATAGATATTTGTGATCTTCAGGTCCGCTATGCTTCGCATCTTCCGCTTGTTTTGAAAGGCCTTACGTGCACTTTTCCAGGAGGAATGAAGGTGGGAGTGGTGGGGCGGACAGGAAGTGGAAAATCTACTTTTATTCAAGCACTCTTCCGGGTTGTAGAACCATCAAGAGGCAAGATTCTTATTGATGACATTGATATACAAAAATAGGCCTGCATGATATAAGATCCAAATTAAGTATTATTCCACAAGATCCAACAATGTTTGAGGGCACTTTACGTACTAACCTT

Ace file of the UniGene sp_v3.0_unigene104796 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter C family member 3 [Arabidopsis thaliana] sp\|Q9LK64.1\|AB3C_ARATH RecName: Full=ABC transporter C family member 3; Short=ABC transporter ABCC.3; Short=AtABCC3; AltName: Full=ATP-energized glutathione S-conjugate pump 3; AltName: Full=Glutath	-	-	67%
FL-Next	sp=ABC transporter C family member 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Sma3	Multidrug resistance protein ABC transporter family	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	7.559e-10	-
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	8.799e-39	-

Source	Gene names
Sma3	At1g04120; At1g30400; At1g30410; At1g30420; At2g34660; At2g47800; At3g13080; At3g13090; At3g13100; At3g21250; At3g59140; At3g60160; At3g60970; At3g62700; B1065G12.13; B1157F09.14; EST1; EST2; EST3; EST4; F17A22.19; F17J16.190; F20D22.11; F26G16.1; F26K9.1

Source	GOs	Term	Type	Identity
Sma3	plant-type vacuole	GO:0000325	Cellular Component	-
Sma3	vacuolar membrane	GO:0005774	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	calmodulin binding	GO:0005516	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sulfonylurea receptor activity	GO:0008281	Molecular Function	-
Sma3	folic acid transporter activity	GO:0008517	Molecular Function	-
Sma3	xenobiotic-transporting ATPase activity	GO:0008559	Molecular Function	-
Sma3	chlorophyll catabolite transmembrane transporter activity	GO:0010290	Molecular Function	-
Sma3	glutathione S-conjugate-exporting ATPase activity	GO:0015431	Molecular Function	-
Sma3	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	stomatal movement	GO:0010118	Biological Process	-
Sma3	cellular potassium ion homeostasis	GO:0030007	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G13080.1	ATMRP3, MRP3, ABCC3 multidrug resistance-associated protein 3 chr3:4196019-4201250 REVERSE LENGTH=1514	67%
RefSeq	Arabidopsis thaliana	NP_187915.1	ABC transporter C family member 3 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002300362.1	multidrug resistance protein ABC transporter family [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LK64

Fln msg: Separated hits, possible frame ERROR between 404 and 431, Distance to subject end: 150 aas, your sequence is shorter than subject: 171 - 1514

Fln protein: VSLPQGAIDASIAGLAITYGLNLSSLQAWMIWLLCNVENEVISVERLLQYSHIPSEAPLVIEESRPNSDWPVKGTIDICDLQVRYASHLPLVLKGLTCTFPGGMKVGVVGRTGSGKSTFIQALFRVVEPSRGKxxxxxxxxxxIGLHDIRSKLSIIPQDPTMFEGTLRTNL

Protein Length: 172

Fln nts: TGGTTTCTTTACCACAAGGTGCCATTGATGCAAGCATTGCTGGGTTGGCAATAACATATGGGCTGAACCTGAGTTCCTTGCAAGCCTGGATGATTTGGCTCTTATGTAATGTGGAGAACGAAGTTATTTCGGTGGAAAGGCTATTGCAGTATTCACATATTCCCAGCGAGGCACCCCTCGTCATAGAAGAGTCAAGGCCAAACTCTGATTGGCCAGTAAAAGGAACAATAGATATTTGTGATCTTCAGGTCCGCTATGCTTCGCATCTTCCGCTTGTTTTGAAAGGCCTTACGTGCACTTTTCCAGGAGGAATGAAGGTGGGAGTGGTGGGGCGGACAGGAAGTGGAAAATCTACTTTTATTCAAGCACTCTTCCGGGTTGTAGAACCATCAAGAGGCAAGATxxxxxxxxxxxxxxxxxxxxxxxxxxxAATAGGCCTGCATGATATAAGATCCAAATTAAGTATTATTCCACAAGATCCAACAATGTTTGAGGGCACTTTACGTACTAACCTT

Fln Alignment:

AllPine_a_c35953___VSLPQGAIDASIAGLAITYGLNLSSLQAWMIWLLCNVENEVISVERLLQYSHIPSEAPLVIEESRPNSDWPVKGTIDICDLQVRYASHLPLVLKGLTCTFPGGMKVGVVGRTGSGKSTFIQALFRVVEPSRGKIxxxxxxxxxIGLHDIRSKLSIIPQDPTMFEGTLRTNL
Q9LK64________________VSIPTGVIDPSLAGLAVTYGLSLNTLQAWLIWTLCNLENKIISVERILQYASVPSEPPLVIESNRPEQSWPSRGEVEIRDLQVRYAPHMPLVLRGITCTFKGGLRTGIVGRTGSGKSTLIQTLFRIVEPSAGEIxxxxxxxxxIGLHDLRLRLSIIPQDPTMFEGTMRSNL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
380	20			80	0.995493
381	20	80			0.995493
382		80		20	0.995493
383	80		20		0.995493
384		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain