SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104661

Length: 412 nt

UniGene Fasta

>sp_v3.0_unigene104661
GCAGTGCACGTCTCATATGTGCCCGGTTAAAATGCATTGGCACGTCGAGCTTAACTACAAAAAGTACTGGAGAGTGAAACTCACTATTACAAATTTTAATTACCGAATGAATTACAGCGACTGGAACATCGTTCTTCAGCATCCGAATTTTGACAATTTAACTCAGATTTCCGGCTTCAACTATAAGCCACTGATTACATATGGGAATTTAAATGGTACTGCATTATTTTGGGGAATCAAACACTACAATGATGTGCTTATAGAAGCAGGACCAAAGGGGATTGTTAAAGGTAAGTTGCTACTGCAGAAAGATAAGACAACATTCACTACCAAACAAGGATGGGCGTTTCCTCGAAGACTGTACTTCAATGGTGAGGCTTGTGTATTGCCACCATATCCTTCACTACCACAC

Ace file of the UniGene sp_v3.0_unigene104661

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ch-cobra n=1 Tax=Cunninghamia lanceolata RepID=B7S746_CUNLA	-	-	0.0	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Sma3	Protein COBRA, putative	-	-	2.671e-17	-

Source	Gene names
Sma3	At1g09790; At3g02210; At3g29810; At5g15630; At5g60920; BA10; BA9; BC1; BC1L2; BC1L4; BC1L6; BC1L7; BC1L9; BC1LP1; Bk2; Bk2L3; Bk2L4; Bk2L6; Bk2L7; Bk2L9; CISEZmG; COB; COBL1; COBL2; COBL3; COBL4; COBL6; F14F8_10; F14P3.14; F21M12.17; F21M12_18; F21N10.4;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	longitudinal side of cell surface	GO:0009930	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	lateral plasma membrane	GO:0016328	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	secondary cell wall biogenesis	GO:0009834	Biological Process	-
Sma3	cellulose microfibril organization	GO:0010215	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Glycosyl-phosphatidyl inositol-anchored, plant	IPR006918	-	-
Sma3	COBRA-like	IPR017391	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G02210.1	COBL1 COBRA-like protein 1 precursor chr3:409352-411478 REVERSE LENGTH=452	65%
RefSeq	Arabidopsis thaliana	NP_186870.1	COBRA-like protein 1 [Arabidopsis thaliana]	65%
RefSeq	Populus trichocarpa	XP_002330139.1	predicted protein [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWK3

Fln msg: Distance to subject end: 27 aas, your sequence is shorter than subject: 137 - 458

Fln protein: QCTSHMCPVKMHWHVELNYKKYWRVKLTITNFNYRMNYSDWNIVLQHPNFDNLTQISGFNYKPLITYGNLNGTALFWGIKHYNDVLIEAGPKGIVKGKLLLQKDKTTFTTKQGWAFPRRLYFNGEACVLPPYPSLPH

Protein Length: 138

Fln nts: GCAGTGCACGTCTCATATGTGCCCGGTTAAAATGCATTGGCACGTCGAGCTTAACTACAAAAAGTACTGGAGAGTGAAACTCACTATTACAAATTTTAATTACCGAATGAATTACAGCGACTGGAACATCGTTCTTCAGCATCCGAATTTTGACAATTTAACTCAGATTTCCGGCTTCAACTATAAGCCACTGATTACATATGGGAATTTAAATGGTACTGCATTATTTTGGGGAATCAAACACTACAATGATGTGCTTATAGAAGCAGGACCAAAGGGGATTGTTAAAGGTAAGTTGCTACTGCAGAAAGATAAGACAACATTCACTACCAAACAAGGATGGGCGTTTCCTCGAAGACTGTACTTCAATGGTGAGGCTTGTGTATTGCCACCATATCCTTCACTACCACAC

Fln Alignment:

AllPine_a_c35743___QCTSHMCPVKMHWHVELNYKKYWRVKLTITNFNYRMNYSDWNIVLQHPNFDNLTQISGFNYKPLITYGNLNGTALFWGIKHYNDVLIEAGPKGIVKGKLLLQKDKTTFTTKQGWAFPRRLYFNGEACVLPP---YPSLPH
A9NWK3________________QCTPHMCPIKIHWHVKLNYKEYWRVKVTITNFNYRMNYTQWNIVVQHPNFDNVTQLFSFNYKPLTPYGKINDTAMLWGVKYYNDMLMQAGEMGNVQSELLFQKDKQTFTFKQGWGFPRRVYFNGDDCVLPPPDAYPWLPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain