SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104106

Length: 262 nt

UniGene Fasta

>sp_v3.0_unigene104106
CAGCAGAGATCTTCAGCGAATAAGGGCGTTTATGCCCGGTGATTATGTCATTCATGGACCTTGGGTGGGAAGAGTCGGTGAAGTGGTTGATAATGTGACTGTGTTATTTGATGACGGATCAAAATGCGAAGTAATGAAGGCCGAACCCGACCGCCTTATTCCAATCCCCGATAATATCCGTTGTCCTTACTTTCCAGGGCAGCGTGTTTGGGGCAGTTCATCGGCAGTTTTCGAGAATGGTCGATGGTTGTGTGGTACATGG

Ace file of the UniGene sp_v3.0_unigene104106

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable ubiquitin-conjugating enzyme E2 23 n=2 Tax=Arabidopsis RepID=UBC23_ARATH	-	-	5.0e-26	58%
FL-Next	sp=Probable ubiquitin-conjugating enzyme E2 23; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	58%

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin--protein ligase.	EC:6.3.2.19	-	5.226e-06	-

Source	Gene names
Sma3	At2g16920; F12A24.10; GSVIVT00004685001; GSVIVT00010190001; GSVIVT00036139001; Os01g0125900; OsI_00213; OsJ_00211; P0037C04.36; P0044F08.17; PHYPADRAFT_40312; POPTRDRAFT_580906; POPTRDRAFT_859165; POPTRDRAFT_876817; RCOM_0936640; RCOM_0978050; UBC23;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	small conjugating protein ligase activity	GO:0019787	Molecular Function	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	post-translational protein modification	GO:0043687	Biological Process	-
Sma3	regulation of protein metabolic process	GO:0051246	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	0.0	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16920.1	UBC23, PFU2 ubiquitin-conjugating enzyme 23 chr2:7334559-7338827 REVERSE LENGTH=1102	3.0e-32	58%
RefSeq	Arabidopsis thaliana	NP_179284.1	putative ubiquitin-conjugating enzyme E2 23 [Arabidopsis thaliana]	4.0e-32	58%
RefSeq	Populus trichocarpa	XP_002329823.1	predicted protein [Populus trichocarpa]	2.0e-28	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9ZVX1

Fln msg: Distance to subject end: 825 aas, your sequence is shorter than subject: 87 - 1102

Fln protein: SRDLQRIRAFMPGDYVIHGPWVGRVGEVVDNVTVLFDDGSKCEVMKAEPDRLIPIPDNIRCPYFPGQRVWGSSSAVFENGRWLCGTW

Protein Length: 88

Fln nts: CAGCAGAGATCTTCAGCGAATAAGGGCGTTTATGCCCGGTGATTATGTCATTCATGGACCTTGGGTGGGAAGAGTCGGTGAAGTGGTTGATAATGTGACTGTGTTATTTGATGACGGATCAAAATGCGAAGTAATGAAGGCCGAACCCGACCGCCTTATTCCAATCCCCGATAATATCCGTTGTCCTTACTTTCCAGGGCAGCGTGTTTGGGGCAGTTCATCGGCAGTTTTCGAGAATGGTCGATGGTTGTGTGGTACATGG

Fln Alignment:

AllPine_a_c34861___SRDLQRIRAFMPGDYVIHGPWVGRVGEVVDNVTVLFDDGSKCEVMKAEPDRLIPIPDN-----IRCPYFPGQRVWGSSSAVFENGRWLCGTW
Q9ZVX1________________TKNLKRVRDFAVGDYVVHGPWLGRIDDVLDNVTVLFDDGSMCKVLRVEPLRLKPIPKNNLEEDANFPYYPGQRVKASSSSVFKNSRWLSGLW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain