SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene104096

Length: 400 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene104096
GCCCTTGAGAGGCTCCCCACTTACGATCGAGTTCGGAGGGGCATTATTCATAATGTTCTGGGTGAGCAAAGTGAGGTGGATGTCACCAATCTTAGCTTCCATGACCGCCAGCTATTGCTCGACAGGCTCTTCAATATGGCCGACGACAATTCTGAGCAGTTTTTGTTCAAGATGAGGGAGCGAATCGACAAAGTAGGTCTGGGGTTGCCGAGGATCGAAGTGCGTTTTCAAGAGTTGAGTGTGGAGGCTGACGTCTATATAGGAAGCAGAGCACTGCCCACCATACCCAACTATATATTCAATATGTCAGAGGCATTAATGAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCCATTCTGGACGACGTCAGTGGCATCATCAAACCACATT

Ace file of the UniGene sp_v3.0_unigene104096 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative ABC transporter n=1 Tax=Malus x domestica RepID=D6N3G0_MALDO	-	-	3.0e-40	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	45%
Sma3	ATP-binding cassette transporter, putative	-	-	3.34e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	8.284e-31	-
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	4.962e-06	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	6.377e-06	-

Source	Gene names
Sma3	ABC1; At1g15520; At2g26910; At3g16340; B1045F02.15; F12C20.5; GSVIVT00016813001; GSVIVT00016819001; GSVIVT00021655001; GSVIVT00022062001; GSVIVT00022064001; GSVIVT00032522001; GSVIVT00032575001; GSVIVT00032578001; GSVIVT00032581001; GSVIVT00034307001; GSV

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G26910.1	PDR4, ATPDR4 pleiotropic drug resistance 4 chr2:11481623-11487874 FORWARD LENGTH=1420	6.99949e-42	51%
RefSeq	Arabidopsis thaliana	NP_180259.1	ABC transporter G family member 32 [Arabidopsis thaliana]	9.00054e-42	51%
RefSeq	Populus trichocarpa	XP_002324959.1	predicted protein [Populus trichocarpa]	4.06377e-44	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LN70

Fln msg: Distance to subject end: 264 aas, your sequence is shorter than subject: 133 - 443

Fln protein: ALERLPTYDRVRRGIIHNVLGEQSEVDVTNLSFHDRQLLLDRLFNMADDNSEQFLFKMRERIDKVGLGLPRIEVRFQELSVEADVYIGSRALPTIPNYIFNMSEALMRSLRIFPGRKRRLSILDDVSGIIKPH

Protein Length: 134

Fln nts: GCCCTTGAGAGGCTCCCCACTTACGATCGAGTTCGGAGGGGCATTATTCATAATGTTCTGGGTGAGCAAAGTGAGGTGGATGTCACCAATCTTAGCTTCCATGACCGCCAGCTATTGCTCGACAGGCTCTTCAATATGGCCGACGACAATTCTGAGCAGTTTTTGTTCAAGATGAGGGAGCGAATCGACAAAGTAGGTCTGGGGTTGCCGAGGATCGAAGTGCGTTTTCAAGAGTTGAGTGTGGAGGCTGACGTCTATATAGGAAGCAGAGCACTGCCCACCATACCCAACTATATATTCAATATGTCAGAGGCATTAATGAGGTCGCTTCGTATCTTCCCGGGCAGGAAGAGACGACTGTCCATTCTGGACGACGTCAGTGGCATCATCAAACCACATT

Fln Alignment:

AllPine_a_c34849___ALERLPTYDRVRRGIIHNVLGEQ------SEVDVTNLSFHDRQLLLDRLFNMADDNSEQFLFKMRERIDKVGLGLPRIEVRFQELSVEADVYIGSRALPTIPNYIFNMSEALMRSLRIFPGRKRRLSILDDVSGIIK
B8LN70________________AIERLPTYERLRTSILNDLVNNQPIGSPHNQIDVTNIPPEARKQLIDRLLGVTDQDNERFLLKLRQRLDGVGIIIPEIEIRFQDLNISADVYVGSRALPTLINWTVNIVEDALETLRLRKTQKKNLTILHDISGIVK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain