SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103634

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene103634
TGCAGAAGATGCAGAAGATGTAGGTCTCACCTGTGGTGAGTACTATGATTTTGAGAGAGAAACATGGGAGTTGATTCCAGACATGATACCCCGGAGTATTACTCAGGCACCACCTCTTGTTGCAGTTGTTAACGACGAGCTTTATGCTTTAGAGGTATCGACAAACCAGTTAAAAGTTTACTTAAAGAAAAGTAATAAATGGAGAGTACTAGGAGAAGTCCCTGTTAGAGCTAACTG

Ace file of the UniGene sp_v3.0_unigene103634

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9RBJ2_RICCO	-	-	4.0e-19	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Sma3	Ubiquitin-protein ligase, putative	-	-	3.3e-06	-

Source	Gene names
Sma3	At3g27150; GSVIVT00037841001; MYF5.2; POPTRDRAFT_842821; POPTRDRAFT_923812; RCOM_0154720; RCOM_1677360; VITISV_041987;

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G27150.1	Galactose oxidase/kelch repeat superfamily protein chr3:10009692-10010960 REVERSE LENGTH=422	1.0e-21	53%
RefSeq	Arabidopsis thaliana	NP_189351.1	F-box/kelch-repeat protein [Arabidopsis thaliana]	2.0e-21	53%
RefSeq	Populus trichocarpa	XP_002298618.1	f-box family protein [Populus trichocarpa]	3.0e-24	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQD3

Fln msg: Distance to subject end: 67 aas, your sequence is shorter than subject: 78 - 432

Fln protein: AEDAEDVGLTCGEYYDFERETWELIPDMIPRSITQAPPLVAVVNDELYALEVSTNQLKVYLKKSNKWRVLGEVPVRAN

Protein Length: 79

Fln nts: TGCAGAAGATGCAGAAGATGTAGGTCTCACCTGTGGTGAGTACTATGATTTTGAGAGAGAAACATGGGAGTTGATTCCAGACATGATACCCCGGAGTATTACTCAGGCACCACCTCTTGTTGCAGTTGTTAACGACGAGCTTTATGCTTTAGAGGTATCGACAAACCAGTTAAAAGTTTACTTAAAGAAAAGTAATAAATGGAGAGTACTAGGAGAAGTCCCTGTTAGAGCTAACTG

Fln Alignment:

AllPine_a_c34084___VGLTCGEYYDFERETWELIPDMIP--RSITQAPPLVAVVNDELYALEVSTNQLKVYLKKSNKWRVLGEVPVRAN
B8LQD3________________VSLTCGEEYNLQTRTWRRIRDMFPGGNRATHAPPLVAVVNNQLYAVEYSRNEVKKYNKENNTWSVVGRLPVRAD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain