SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103504

Length: 211 nt

UniGene Fasta

>sp_v3.0_unigene103504
AATAATCTCAGGCTCTCTTCTTACTGGCGGTCAGACAGGAAAAGAGGTGGCTGAAACATTGGACAGGCTTCGCACAGGCACTATAAAGGTACTGTTTATTTCTCCTGAGCGGCTGTTGAATGACAACTTTTTGTCAATCATTGAAAGTATTCCCTTAATTTCTTTGGTGGTTGTTGATGAAGCACACTGTTTATCTGAGTGGTCGCATAAC

Ace file of the UniGene sp_v3.0_unigene103504

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative ATP-dependent DNA helicase RecQ [Arabidopsis thaliana]	-	-	1.0e-11	51%
FL-Next	sp=ATP-dependent DNA helicase Q-like 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	61%

Source	Gene names
Sma3	At1g27880; F28L5.4; GSVIVT00035084001; MICPUCDRAFT_636; MICPUN_50295; OJ000223_09.17; OJ991113_30.2; Os04g0486800; OsI_16386; OsJ_15254; Ot05g04290; PHYPADRAFT_145700; POPTRDRAFT_886009; RCOM_1081750; rql-5;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	DNA recombination	GO:0006310	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018329	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G27880.1	DEAD/DEAH box RNA helicase family protein chr1:9708940-9713901 FORWARD LENGTH=911	8.0e-16	61%
RefSeq	Arabidopsis thaliana	NP_174109.2	ATP-dependent DNA helicase Q-like 5 [Arabidopsis thaliana]	1.0e-15	61%
RefSeq	Populus trichocarpa	XP_002315627.1	predicted protein [Populus trichocarpa]	3.0e-14	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WVW7

Fln msg: Distance to subject end: 510 aas, your sequence is shorter than subject: 70 - 911

Fln protein: IISGSLLTGGQTGKEVAETLDRLRTGTIKVLFISPERLLNDNFLSIIESIPLISLVVVDEAHCLSEWSHN

Protein Length: 71

Fln nts: AATAATCTCAGGCTCTCTTCTTACTGGCGGTCAGACAGGAAAAGAGGTGGCTGAAACATTGGACAGGCTTCGCACAGGCACTATAAAGGTACTGTTTATTTCTCCTGAGCGGCTGTTGAATGACAACTTTTTGTCAATCATTGAAAGTATTCCCTTAATTTCTTTGGTGGTTGTTGATGAAGCACACTGTTTATCTGAGTGGTCGCATAAC

Fln Alignment:

AllPine_a_c33868___IISGSLLTGGQTGKEVAETLDRLRTGTIKVLFISPERLLNDNFXXXXXXXXXXXXXXXDEAHCLSEWSHN
Q0WVW7________________IIKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPERLLNVEFLSMFRMSLSVSLVVVDEAHCVSEWSHN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain