SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene103289

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene103289
CGTCGTGACCTTGGCTGTCACTCATTCTAGTGGAGTTCTTGGTGGTTTAAAGAGCAGCATCTATTCTCTAGAGGCAAAAGAACGCCAAGAAACAATAGATACTGCCTTACATGATTATTTCAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAACTGTAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATGCTTCAGATGATATCATCTATTTTAAGGTGATGGCTATGGAACCCTTGAATGAAGCTATTCTCTGTGTTAACTGCCATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTCATGGCTATTGGAGGTGCAGAATGCACACCTTTGCAAGAGGATATT

Ace file of the UniGene sp_v3.0_unigene103289

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxin 6 [Arabidopsis thaliana] sp\|Q8RY16.1\|PEX6_ARATH RecName: Full=Peroxisome biogenesis protein 6; AltName: Full=Peroxin-6; Short=AtPEX6 gb\|AAL84960.1\| At1g03000/F22D16.27 [Arabidopsis thaliana] gb\|AAN64542.1\| At1g03000/F22D16.27 [Arabidopsis thaliana	-	-	4.0e-26	55%
FL-Next	sp=Peroxisome biogenesis protein 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%

Source	Gene names
Sma3	At1g03000; F10O3.18; GSVIVT00023563001; MtrDRAFT_AC157502g14v2; POPTRDRAFT_245912; RCOM_0555340; VITISV_025716;

Source	GOs	Term	Type	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	fatty acid beta-oxidation	GO:0006635	Biological Process	-
Sma3	protein import into peroxisome matrix	GO:0016558	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	L-lactate dehydrogenase, active site	IPR018177	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G03000.1	PEX6 peroxin 6 chr1:688057-692453 REVERSE LENGTH=941	2.0e-31	55%
RefSeq	Arabidopsis thaliana	NP_171799.2	peroxin 6 [Arabidopsis thaliana]	2.0e-31	55%
RefSeq	Populus trichocarpa	XP_002321026.1	predicted protein, partial [Populus trichocarpa]	3.0e-37	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8RY16

Fln msg: Distance to subject end: 586 aas, your sequence is shorter than subject: 134 - 941

Fln protein: VVTLAVTHSSGVLGGLKSSIYSLEAKERQETIDTALHDYFKVDRVLARGDIFSIQLDWNCKSEICSHCNKKTAADASDDIIYFKVMAMEPLNEAILCVNCHQTALVLGGSVPSQVPPAFMAIGGAECTPLQEDI

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTAGTGGAGTTCTTGGTGGTTTAAAGAGCAGCATCTATTCTCTAGAGGCAAAAGAACGCCAAGAAACAATAGATACTGCCTTACATGATTATTTCAAAGTTGACAGAGTTCTTGCAAGGGGTGACATTTTTTCTATCCAGCTTGATTGGAACTGTAAATCAGAGATTTGCAGTCACTGTAACAAGAAGACAGCAGCAGATGCTTCAGATGATATCATCTATTTTAAGGTGATGGCTATGGAACCCTTGAATGAAGCTATTCTCTGTGTTAACTGCCATCAAACTGCCCTTGTACTTGGTGGCAGTGTACCTTCACAAGTGCCTCCTGCTTTCATGGCTATTGGAGGTGCAGAATGCACACCTTTGCAAGAGGATATT

Fln Alignment:

AllPine_a_c33501___SLEAKERQETIDTALHDYFKVDRVLARGDIFSIQLDWNCKSEICSHCNKKTAADASDDIIYFKVMAMEPLNEAILCVNCHQTALVLGGSVPSQVPPAFMAIGGAECTPLQED
Q8RY16________________SFEAEERQGLIDSALQKYFGTDRQLSRGDIFRIYIDWNCGSSICNPCSQRLCSE-SDDYIYFKVIAMEPSNERFLRVNHSQTALVLGGTVSSGLPPDLLVYRSKVPMPLQEE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain