SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102929

Length: 700 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene102929 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] ref\|NP_001185050.1\| putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana] gb\|AAD30595.1\|AC007369_5 Putative RNA helicase [Arabidopsis thaliana] gb\|AEE30046.1	-	-	0.0	74%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	84%

Source	Gene names
Sma3	At1g20960; At2g42270; CHLREDRAFT_123427; F9H16.5; GSVIVT00001949001; LOC_Os03g53220; MICPUCDRAFT_48293; MICPUN_98172; OSJNBb0036F07.6; OSTLU_44002; Os02g0107000; OsI_05501; OsI_05521; OsI_05524; OsI_13469; OsJ_05035; OsJ_05048; OsJ_12529; Ot11g01350; P001

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Sec63 domain	IPR004179	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3		IPR018127	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20960.1	emb1507 U5 small nuclear ribonucleoprotein helicase, putative chr1:7302591-7309914 REVERSE LENGTH=2171	79%
RefSeq	Arabidopsis thaliana	NP_001185050.1	putative U5 small nuclear ribonucleoprotein helicase [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002322252.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
224	25		75		0.996473
226	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain