SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102580

Length: 206 nt

UniGene Fasta

>sp_v3.0_unigene102580
GCTCATGTTTGGTGGGAGAAGAGGGGGAAGGAGCAGCTTCAGTTGTGGTGTGTAAGGCACAAGGCATCCTCCTCCTGCAGGTCATTGACAGAGATGTATAAGAATCAGCTCCAAGAGCTCGCTCAAAGGAGCTGCTTCAATCTGCCATCGTACTCCTGTATCAGAGAGGGCCTGATCATGCACCCAGATTCAAATCTACTGTAAAT

Ace file of the UniGene sp_v3.0_unigene102580

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Double-stranded RNA binding protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TDF6_PHYPA	-	-	1.0e-11	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Gb\|AAD20688.1	-	-	6.584e-09	-

Source	Gene names
Sma3	At2g28380; At3g26932; At5g41070; At5g41070/MEE6_14; DRB1502; DRB1504; GSVIVT00019816001; GSVIVT00024539001; GSVIVT00024541001; GSVIVT00031077001; GSVIVT00037908001; LOC_Os10g33970; MA4_106O17.54; OSJNBa0093B11.1; Os05g0150400; Os10g0480500; OsDRB2; OsI_31

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	identical protein binding	GO:0042802	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Vacuolar fusion protein MON1	IPR004353	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Uncharacterised protein family UPF0406	IPR019146	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G28380.1	DRB2 dsRNA-binding protein 2 chr2:12134098-12135915 REVERSE LENGTH=434	4.0e-13	96%
RefSeq	Arabidopsis thaliana	NP_565672.1	dsRNA-binding protein 2 [Arabidopsis thaliana]	6.0e-13	96%
RefSeq	Populus trichocarpa	XP_002328379.1	predicted protein [Populus trichocarpa]	1.0e-13	100%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM70

Fln msg: Overlapping hits, possible frame ERROR between 171 and 162, Distance to subject end: 350 aas, your sequence is shorter than subject: 38 - 388

Fln protein: MYKNQLQELAQRSCFNLPSYSCxxxxxDHAPRFKSTVN

Protein Length: 39

Fln nts: GCTCATGTTTGGTGGGAGAAGAGGGGGAAGGAGCAGCTTCAGTTGTGGTGTGTAAGGCACAAGGCATCCTCCTCCTGCAGGTCATTGACAGAG_-_ATGTATAAGAATCAGCTCCAAGAGCTCGCTCAAAGGAGCTGCTTCAATCTGCCATCGTACTCCTGTxxxxxxxxxxxxxxxGATCATGCACCCAGATTCAAATCTACTGTAAAT

Fln Alignment:

AllPine_a_c32070___MYKNQLQELAQRSCFNLPSYSCIxxxPDHAPRFKSTVN
B8LM70________________MYKNQLQELAQRNCFNLPLYGCIxxxPDHAPRFRATVN

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
65			75	25	0.996478

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain