SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102497

Length: 920 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102497

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine rich repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RTY6_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Ran GTPase activating protein	-	-	7.531e-18	-

Source	Gene names
Sma3	At3g63130; At5g19320; GSVIVT00019938001; GSVIVT00023666001; GSVIVT00027578001; OJ1288_A07.8; Os05g0543200; OsI_20842; OsJ_19409; PHYPADRAFT_180378; PHYPADRAFT_212538; POPTRDRAFT_1071324; POPTRDRAFT_1090360; POPTRDRAFT_205443; RANGAP1; RANGAP2; RCOM_055781

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	cell plate	GO:0009504	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nuclear membrane	GO:0031965	Cellular Component	-
Sma3	cell division site	GO:0032153	Cellular Component	-
Sma3	diacylglycerol kinase activity	GO:0004143	Molecular Function	-
Sma3	GTPase activator activity	GO:0005096	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	M phase specific microtubule process	GO:0000072	Biological Process	-
Sma3	cytokinesis	GO:0000910	Biological Process	-
Sma3	protein import into nucleus	GO:0006606	Biological Process	-
Sma3	nucleocytoplasmic transport	GO:0006913	Biological Process	-
Sma3	activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	GO:0007205	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	0.0	-
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19320.1	RANGAP2 RAN GTPase activating protein 2 chr5:6505310-6506947 REVERSE LENGTH=545	53%
RefSeq	Arabidopsis thaliana	NP_197433.1	RAN GTPase-activating protein 2 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002314715.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW46

Fln msg: Separated hits, possible frame ERROR between 184 and 210, your sequence is shorter than subject: 254 - 553

Fln protein: FRCSSTRVGAEGGIALVGALGTGNRLKKLDLRDNMFGKKCGVALSRALSPHLGLTEAYLSxxxxxxxxxxIAIANSLKEGAPSLKVLELAGNEITVKAATALAECLRLKRMLTKLGLSENELKDEGSVLICRALEEGHEHLKELDLSSNSISGVGAKVAAELVVNKPDFDLLNIDGNCISEEGIDAVKDVLRRGDKGVSVLGSLEDNDAEGEGNDYEDEDGDGDGDGDEDDDENESSDSDGDLEDKLKDLKMQ*

Protein Length: 255

Fln nts: TTTCAGATGCTCATCTACTAGGGTTGGTGCTGAGGGTGGTATAGCTTTAGTAGGAGCTCTAGGAACAGGAAATAGATTGAAGAAGTTGGATTTAAGGGATAACATGTTTGGGAAGAAGTGCGGGGTTGCTTTGAGCAGAGCCCTTTCACCGCATTTGGGTCTTACAGAGGCTTACTTGAGCTAxxxxxxxxxxxxxxxxxxxxxxxxxxxAATAGCTATTGCCAACAGCCTGAAGGAAGGGGCTCCGTCCCTCAAGGTTCTGGAGCTTGCAGGCAATGAGATTACTGTGAAAGCAGCTACGGCGTTGGCAGAGTGCCTTCGTTTGAAAAGAATGCTTACAAAGTTAGGTTTGTCAGAGAATGAACTCAAGGACGAGGGATCAGTGTTGATCTGCAGAGCCCTTGAGGAAGGTCACGAGCATCTGAAGGAACTTGATTTGAGTTCAAATTCTATCAGTGGAGTAGGGGCGAAGGTTGCAGCTGAGTTAGTTGTCAATAAGCCTGACTTCGATCTGCTGAATATTGATGGAAATTGCATTTCGGAAGAAGGGATTGATGCTGTCAAAGATGTCCTGAGAAGAGGTGACAAGGGTGTTTCCGTGCTTGGGTCTCTGGAAGATAATGATGCAGAGGGCGAAGGTAATGACTATGAGGACGAGGATGGGGACGGGGACGGGGACGGGGACGAGGATGATGATGAAAATGAGAGCAGTGATAGTGATGGTGATTTAGAGGACAAGCTTAAGGACCTGAAAATGCAGTAGCGCAATGCATAGTCTTCGACATACATTACAAGGACAAATTTGGGCCTTCATTTGCTGCGAAAACGCTGATCCCGTGAAGGCAAACTTTCAGGGTTTTAACTGCTGCAGATAAGTCCCTTTACATTAAATGATTGGAAATTCTATACCCGGCTAAATGTT

Fln Alignment:

AllPine_a_c31816___FRCSSTRVGAEGGIALVGALGTGNRLKKLDLRDNMFGKKCGVALSRALSPHLGLTEAYLSYxxxxxxxxxIAIANSLKEGAPSLKVLELAGNEITVKAATALAECLRLKRMLTKLGLSENELKDEGSVLICRALEEGHEHLKELDLSSNSISGVGAKVAAELVVNKPDFDLLNIDGNCISEEGIDAVKDVLRRGDKGVSVLGSL
A9NW46________________FRCSSTRVGAEGGIALVGALGAGNRLKKLDLRDNMFGKKCGVALSRALSGHLGLTEAYLSYxxxxxxxxxIALANSLKEGAPSLKVLEIAGNDVTVKAAPALAECLGLKRMLTKLVLSENELKDEGSVVICGALVEGHEHLKELDLSSNFISGVGAKAAAESVINKPDFDLLNIDGNCISEEGIDAVKDVLRRGVKGVTVLGSL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
322	14			85	0.993533
323		14	85		0.993533
325	85			14	0.993533
326	85		14		0.993533
327	85		14		0.993533
491	12			87	0.992554
494	88			11	0.923564
500	12	87			0.992554
503			87	12	0.992554
540	16	83			0.994512
541			83	16	0.994512
543	83		16		0.994512
544	83		16		0.994512
788		75		25	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
660	684	GGGGAC GGGGAC GGGGAC GGGGAC G	25

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain