SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102403

Length: 234 nt

UniGene Fasta

>sp_v3.0_unigene102403
AATGGGTTGTTGAGGGCACTGGTATAATAGTTGCCGTGGTGTTGTTGACTGTCACTTTCGGTTGGTTGATTACACCTCTTGTTGGAAAGTGCAGAAACTAGGGAGCATCCTTCCTTTTCTTATAGGAGGTCTTTGTGCTTTCACAATTGTGATTTTTCTACGCTTTGGAGTGCTTCCAAGGATCAGATATGGACCAGCTCGCTATTGGACAATCTTATTAGTGTTTTGGTTCCT

Ace file of the UniGene sp_v3.0_unigene102403

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RING/FYVE/PHD zinc finger-containing protein n=4 Tax=Arabidopsis RepID=F4KCH0_ARATH	-	-	2.0e-18	75%
FL-Next	tr=RING/FYVE/PHD zinc finger-containing protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	68%

Source	Gene names
Sma3	At5g08750; At5g08750/T2K12_100; At5g63780; GSVIVT00019280001; POPTRDRAFT_1077288; POPTRDRAFT_1082429;

Source	GOs	Term	Type	e value	Identity
Sma3	zinc ion binding	GO:0008270	Molecular Function	0.0	-
Sma3	maintenance of shoot apical meristem identity	GO:0010492	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-CH-type	IPR011016	-	0.0	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G08750.3	RING/FYVE/PHD zinc finger superfamily protein chr5:2852912-2854343 FORWARD LENGTH=370	8.0e-21	75%
RefSeq	Arabidopsis thaliana	NP_001078548.1	RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]	1.0e-20	75%
RefSeq	Populus trichocarpa	XP_002307061.1	predicted protein [Populus trichocarpa]	5.0e-20	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F4KCH0

Fln msg: Separated hits, possible frame ERROR between 89 and 110, Distance to subject end: 16 aas, your sequence is shorter than subject: 77 - 370

Fln protein: WVVEGTGIIVAVVLLTVTFGWLITPLVGxxxxxxxxLPFLIGGLCAFTIVIFLRFGVLPRIRYGPARYWTILLVFWF

Protein Length: 78

Fln nts: AATGGGTTGTTGAGGGCACTGGTATAATAGTTGCCGTGGTGTTGTTGACTGTCACTTTCGGTTGGTTGATTACACCTCTTGTTGGAAAxxxxxxxxxxxxxxxxxxxxxCCTTCCTTTTCTTATAGGAGGTCTTTGTGCTTTCACAATTGTGATTTTTCTACGCTTTGGAGTGCTTCCAAGGATCAGATATGGACCAGCTCGCTATTGGACAATCTTATTAGTGTTTTGGTTCCT

Fln Alignment:

AllPine_a_c31530___WVVEGTGIIVAVVLLTVTFGWLITPLVGKxxxxxxxLPFLIGGLCAFTIVIFLRFGVLPRIRYGPARYWTILLVFWF
F4KCH0________________WAVEGTGILLATGLLTVTLAWLIAPRVGKxxxxxxxLHILLGGLCALTVVIFFRFVVLTRIRYGPARYWAILFVFWF

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
44		33	66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain