SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102153

Length: 847 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102153

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Camellia sinensis RepID=A8W7J7_CAMSI	-	-	61%
FL-Next	sp=Lipoxygenase; Taxus wallichiana var. chinensis (Chinese yew) (Taxus chinensis).	-	-	66%
Sma3	Lipoxygenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Linoleic acid metabolism	00591	%
Sma3	alpha-Linolenic acid metabolism	00592	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%

Source	Gene names
Sma3	At1g17420; At1g55020; At1g72520; B1168A08.24; B1168A08.28-1; B1168A08.28-2; CM-LOX1; CM-LOX2; F14C21.3; F14C21.54; F28G4.10; F28P22.29; GSVIVT00008869001; GSVIVT00013309001; GSVIVT00019960001; GSVIVT00022800001; GSVIVT00022801001; GSVIVT00024664001; GSVIV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	phytoene dehydrogenase activity	GO:0016166	Molecular Function	-
Sma3	response to wounding	GO:0009611	Biological Process	-
Sma3	oxylipin biosynthetic process	GO:0031408	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	response to other organism	GO:0051707	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ketose-bisphosphate aldolase, class-II	IPR000771	-	-
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-
Sma3	Hemopexin/matrixin, conserved site	IPR018486	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55020.1	LOX1, ATLOX1 lipoxygenase 1 chr1:20525798-20530143 FORWARD LENGTH=859	58%
RefSeq	Arabidopsis thaliana	NP_175900.1	lipoxygenase 1 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002319015.1	predicted protein [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G9L7U0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 445 aas, your sequence is shorter than subject: 249 - 855

Fln protein: SWVYPVSNYNKGRVFFYNRSFLPANSPPALIKLRNEELISLRGEYDGISETERKEWERVYDYALYNDLGDPDKNMELSRPVLGGSQHFPYPRRVRTGRRPTKTDPAAESRLPLQMNFDIYVPRDERFGHLKMSDFLADSLKSVVQFLIPELKSLFDPVPGEFESFEDIRKLYSDGIKLSDNSILDAVKNGVLSLELMKELFTTDGESLLKYPLPQVIAANEFAWRRDEEFARQMLCRWQSSLLYRDSK*

Protein Length: 250

Fln nts: CTCTTGGGTTTATCCCGTCTCTAATTATAACAAAGGCCGTGTTTTCTTCTATAATCGGAGCTTTCTCCCTGCGAATTCTCCCCCCGCGCTCATAAAACTGAGGAATGAAGAGTTGATAAGCCTGAGAGGCGAATACGATGGAATTTCGGAGACTGAGAGGAAGGAATGGGAGAGAGTGTATGACTATGCTTTGTACAATGATCTGGGAGACCCAGACAAGAATATGGAGCTTAGCCGCCCAGTGCTGGGAGGGTCTCAGCACTTTCCGTACCCTCGGAGAGTGAGAACGGGTCGACGACCTACAAAAACAGACCCCGCTGCTGAAAGTAGATTGCCATTACAAATGAACTTCGACATATACGTTCCGCGAGATGAACGTTTTGGGCATCTGAAAATGTCTGATTTCTTAGCGGATTCCCTCAAGTCAGTCGTGCAATTCTTGATACCAGAGCTCAAATCTCTGTTCGATCCAGTCCCCGGCGAATTCGAATCGTTTGAAGACATTAGGAAGCTCTACTCTGATGGGATAAAGCTTTCCGACAACTCAATTCTTGACGCTGTTAAGAATGGTGTTCTGTCTCTTGAGCTCATGAAAGAGCTTTTCACAACAGACGGCGAAAGTTTGCTCAAATATCCCCTTCCTCAAGTTATTGCCGCTAATGAATTTGCCTGGAGGAGAGATGAAGAGTTTGCGCGCCAGATGCTTTGCAGGTGGCAATCCAGTTTGTTATACAGAGACTCCAAGTAATTAGCAAAGCACTAACCCTTCCCTCTAGTTTCTAACTAATCTTATCTTTGGAGCTTAACTTTCATGGACATCCTTATTTAGATTACTAATCTTATCTTT

Fln Alignment:

AllPine_a_c30694___SWVYPVSNYNKGRVFFYNRSFLPANSPPALIKLRNEELISLRGEYDGISETERKEWERVYDYALYNDLGDPDKNMELSRPVLGGSQHFPYPRRVRTGRRPTKTDPAAESRLPLQMNFDIYVPRDERFGHLKMSDFLADSLKSVVQFLIPELKSLFDPVPGEFESFEDIRKLYSDGIKLSDNSILDAVKNGVLSLELMKELFTTDGESLLKYPLPQVIAANEFAWRRDEEFARQML
G9L7U0________________SWVYPASRYNTDRIFFSNRNYLPHETPPALVKLRNEELVNLRGDGSG----KREEWDRVYDYDLYNDLGNPDKDEEYSRQVLGGSKDFPYPRRGRTGRKPTKTDAASESRVPIQSSLDIFVPRDERFGHLKLSDFLAYALKSVGQVLLPELKSLFDSTPNEFDSFEDLMKLYSDGIKLPSNPLLDAARS-LIPLEFIKQLVRSDGEKLLKFPIPKVIASDEFAWRKDEEFAREML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain