SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102083

Length: 962 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene102083

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PTEN_C2 multi-domain protein	-	-	6.0e-37	36%
FL-Next	sp=Formin-like protein 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	61%

Source	Gene names
Sma3	At1g31810; At2g25050; At5g07740/At5g07750; F27C12.3; F5M6.18; FH14; FH18; FH20; FH3; FH6; GSVIVT00003176001; GSVIVT00016289001; GSVIVT00032770001; LOC_Os08g17820; LOC_Os10g02980; MBK20.20/MBK20.21; OJ1003_E05.5-1; OSJNAa0079B05.2; OSJNBa0079B05.10; Os08g0

Source	GOs	Term	Type	Identity
Sma3	actin binding	GO:0003779	Molecular Function	-
Sma3	phosphoprotein phosphatase activity	GO:0004721	Molecular Function	-
Sma3	cellular component organization	GO:0016043	Biological Process	-
Sma3	actin cytoskeleton organization	GO:0030036	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Actin-binding FH2/DRF autoregulatory	IPR003104	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Tensin phosphatase, C2 domain	IPR014020	-	-
Sma3	Actin-binding FH2	IPR015425	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G31810.1	AFH14 Formin Homology 14 chr1:11399922-11405761 REVERSE LENGTH=1230	64%
RefSeq	Arabidopsis thaliana	NP_174461.3	formin-like protein 14 [Arabidopsis thaliana]	64%
RefSeq	Populus trichocarpa	XP_002303470.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7G6K7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 700 aas, your sequence is shorter than subject: 320 - 1234

Fln protein: S*PWLSLILRAVPNFDSQNGCRPIIRVFGRDIHNKGGLSTQMLFSMTKKKKTLRHYRQVDCDVVKIDIQCMVQGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKERFSKNFRAEVLFGEVEALSPSRPPIATLNGEEKGGLPVEAFARVQEYFSGVEWIDSGGDAALLFFKQISSDDFQERFEKLFSNGMNDRPALRSKQNIHSTPIVFEEEEKEVKQEDSLPTSLHSKSKSDPNLSAQVAPYTAHGSTAPPGTTPPPLSRAMSSSLPPASLPQRSGPPPPPPPPPLPCLSKPMHLHLCLHF

Protein Length: 321

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCGTGCTGTACCTAACTTTGATTCTCAGAATGGTTGTCGTCCAATTATTCGTGTGTTTGGGCGGGATATTCATAATAAGGGCGGGCTTTCCACACAGATGCTTTTCTCCATGACTAAGAAGAAGAAAACCTTGCGACACTACAGACAGGTTGATTGTGATGTTGTGAAAATTGACATCCAATGCATGGTACAAGGGGATGTTGTTTTGGAATGCATTCATTTAGAGACAGATCCAGAGAGAGAGGTTATGATGTTCAGAGTTATGTTCAATACTGCTTTTATTCGGTCCAACATTCTGATGCTAAACGTAGATGATCTTGACATACTCTGGGATTCTAAGGAACGGTTTTCAAAAAATTTCCGAGCTGAAGTCCTCTTTGGAGAAGTAGAAGCCCTTTCTCCTTCAAGACCACCTATCGCAACACTGAATGGAGAAGAAAAGGGTGGGTTGCCTGTGGAAGCTTTTGCAAGGGTCCAGGAATATTTCAGTGGTGTTGAGTGGATTGATAGTGGAGGTGATGCTGCACTATTGTTCTTTAAACAGATTTCGTCCGATGACTTTCAAGAAAGATTTGAGAAACTCTTTTCCAATGGTATGAACGATCGCCCAGCTTTGCGTAGCAAGCAGAATATACATTCAACACCTATTGTATTTGAAGAAGAGGAGAAAGAGGTTAAGCAGGAAGATTCTCTGCCAACTTCATTGCATTCTAAATCAAAATCTGATCCCAATTTGTCAGCTCAAGTTGCACCATATACTGCTCATGGATCAACAGCACCTCCAGGAACAACTCCTCCACCACTGTCAAGGGCAATGTCATCCTCCCTTCCTCCAGCATCTCTTCCACAAAGATCAGGCCCACCTCCACCTCCACCCCCTCCACCTTTGCCATGTTTGTCTAAGCCCATGCATCTTCACCTCTGCCTCCACTTC

Fln Alignment:

AllPine_a_c30464___LILRAVPNFDSQNGCRPIIRVFGRDIHNKGGLSTQMLFSMTKKKKTLRHYRQVDCDVVKIDIQCMVQGDVVLECIHLETDPEREVMMFRVMFNTAFIRSNILMLNVDDLDILWDSKERFSKNFRAEVLFGEVEALSPSRPPIATLNGEEKGGLPVEAFARVQEYFSGVEWIDSGGDAALLFFKQISSDDFQERFEKLFSNGMNDRPALRSK
Q7G6K7________________LILRAIPSFDSDNGCRPLVRIFGRNIIGKNASTSNMIFSMPKKK-TLRHYRQEDCDVIKIDIQCPVQGDVVLECVHLDLDPEKEVMMFRIMFNTAFIRSNVLMLNSDDIDIVWGSKDQYPRNFRAEMLFCELGGISPARPPTATLNGDMKGGLPIEAFSAVQELFNGVDWMESSDNAAFWLLKEFSANSLQEKFQKLILSDMEELSKFQAK

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
447		16		83	0.994517
448	83		16		0.994519
452		83		16	0.994517
453	83		16		0.994523
456	83	16			0.994517
457		83		16	0.994517
460	80		20		0.995493
461	80	20			0.995493
465	80			20	0.995493
466		20	80		0.995493
470	83	16			0.994523
471	83			16	0.994523
472	83	16			0.994523
617			33	66	1.0
619			33	66	1.0
620	33			66	1.0
624	66			33	1.0
630	66		33		1.0
632		33	66		1.0
635	66			33	1.0
637	33		66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain