SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene102048

Length: 645 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene102048 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sex determination protein tasselseed-2 [Zea mays] sp\|P50160.1\|TS2_MAIZE RecName: Full=Sex determination protein tasselseed-2 gb\|AAC37345.1\| alcohol dehydrogenase [Zea mays]	-	-	6.0e-39	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	9.962e-13	-
Sma3	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.	EC:1.1.1.53	-	5.74e-11	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		5.74e-11	%
Sma3	Metabolic pathways	01100		5.74e-11	%

Source	Gene names
Sma3	3bhsd; ABA2; ADH; AT4g03140; ATA1; At1g52340; At2g47130; At2g47140; At3g26760; At3g26770; At3g42960; At3g51680; CTA; CTS2; F18P9_120; F19K6.3; F4C21.6; GIN1; GSVIVT00021544001; GSVIVT00021546001; GSVIVT00021547001; GSVIVT00023991001; GSVIVT00028187001; GS

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	xanthoxin dehydrogenase activity	GO:0010301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	testosterone dehydrogenase [NAD(P)] activity	GO:0030283	Molecular Function	-
Sma3	proline biosynthetic process	GO:0006561	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	regulation of abscisic acid biosynthetic process	GO:0010115	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G26770.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:9845494-9847079 FORWARD LENGTH=306	6.02558e-44	46%
RefSeq	Arabidopsis thaliana	NP_566798.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	7.9874e-44	46%
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	0.0	49%

Full-Lengther Next Prediction

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
402		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain