SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene101493

Length: 919 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene101493 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF2348 multi-domain protein	-	-	7.00649e-43	26%
FL-Next	sp=Elongator complex protein 6; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	43%

Source	Gene names
Sma3	AT4G10090; At4g10090; GSVIVT00029487001; POPTRDRAFT_832517; RCOM_0743820; VITISV_007890;

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0405	IPR018627	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002312051.1	predicted protein [Populus trichocarpa]	0.0	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: sp_plants

Fln subject: Q8L9Y2

Fln msg: STOP codon was not found. Distance to subject end: 6 aas,

Fln protein: MTLLDEALALQGSNVLQPGKVVVIKDCVATSGAFILHCLIKKMLMRSSESAMLPKARAQKLSPTVGSVLFIALSEPFVHYERILRKLGCNLLAYRDNGQFIFMDMLHPDYTGGKVTKTENALFELYKSIHQKLQECISSEGKRGGVCIMIDDLSLLEIVAHGSEEHVLDFLHYCRILTSEQGCSLVLLSHQDIYASMDNSSFIRHLEYFADIVIDVEPLNSGLAADIHGQLTVFHRSNHEDISNMGSGPRNMLHNFHFRVKENQVEY

Protein Length: 268

Fln nts: TAAAGCACAAGCGCCGAGAGGGGAACATAATACCAGGTAGAACGATAGAGACGAGGAGCCCTAACGCGAACGAAGTATAGAATCACCTTAAGCAGGATAAAATATTCACAATATCA_-_ATGACATTATTGGATGAAGCTTTGGCCTTACAAGGCAGCAATGTATTGCAGCCTGGGAAGGTTGTAGTTATCAAAGATTGTGTGGCTACTAGTGGTGCTTTCATTCTCCACTGCCTCATCAAGAAAATGCTGATGCGTTCTTCCGAAAGTGCTATGTTGCCCAAAGCAAGGGCTCAAAAACTTTCACCTACAGTTGGATCAGTGTTGTTTATTGCTCTAAGTGAGCCATTTGTGCATTATGAACGGATTTTAAGAAAACTTGGATGTAATTTGCTAGCTTATAGAGACAATGGTCAATTCATTTTCATGGACATGCTTCACCCTGATTACACAGGTGGCAAAGTAACAAAAACAGAGAATGCACTTTTTGAGCTTTACAAAAGCATCCACCAAAAACTGCAGGAGTGCATTTCTTCTGAGGGAAAGAGAGGAGGTGTTTGTATCATGATTGATGATTTATCTCTTTTGGAGATTGTGGCCCATGGATCAGAAGAGCACGTCTTAGATTTTTTGCATTATTGCCGTATTTTAACATCTGAGCAGGGCTGTTCTCTTGTTCTACTTTCACATCAAGATATTTATGCTAGTATGGACAATTCAAGTTTCATCCGGCATCTAGAGTACTTTGCAGATATTGTGATAGATGTAGAACCTTTGAACTCTGGGCTTGCAGCAGATATACATGGCCAGTTGACGGTATTTCATAGGTCAAATCACGAGGACATAAGCAACATGGGAAGTGGACCAAGAAACATGCTTCATAATTTTCATTTTAGAGTTAAAGAGAATCAAGTGGAATATTT

Fln Alignment:

AllPine_a_c28763___SMTLLDEALALQGSNVLQP---GKVVVIKDCVATSGAFILHCLIKKMLMRSSESAMLPKARAQKLSPTVGSVLFIALSEPFVHYERILRKLGCNLLAYRDNGQFIFMDMLHPDYTGG-KVTKTENALFELYKSIHQKLQECISSEGKRGGVCIMIDDLSLLEIVAHGSE-EHVLDFLHYCRILTSEQGCSLVLLSHQDIYASMDNSSFIRHLEYFADIVIDVEPLNSGLAADIHGQLTVFHRSNHEDISNMGSG-PRNMLHNFHFRVKENQVEY
Q8L9Y2________________SLNLLDLALGFDEQLAIPSPLNGKVILIEDCVETSGSFVLHQLMKRVLSSNSSDALI----------------FLAFARPFSHYDRILRKLGCNLATHKSNNRLVFFDMLMVKCSDGDQMEDNVSAVAKLFREIQETVRKLQSVTS--GNITVMVDDMSLLEIATTGSNSDHVLDFLHYCHTLSSESNCSLVILNHEDIYASMERPAFLLQMVCLADVVIKAEPLASGLANDVHGQLTVLNKG----ISNSGRGSSRNKLQNFQFRIKENGIDY

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
617		20		80	0.995493
682		40		60	1.0
790	25			25	0.995533
839	75	25			0.996473
840	25		75		0.996474
841			75	25	0.996474
897	66	33			0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain