SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100759

Length: 225 nt

UniGene Fasta

>sp_v3.0_unigene100759
GCCACTGGTGGCGGCAGCGGAGCGGTTCAGCAGTCCTCGACGGCGCTTAATAATTCTTCTGCGCAGCAGCAACCCGGTGTGATGAAGCGGAAGAGAAATCTGCCTGGCATGCCTGACCCAGATGCGGAAGTGATAGCTTTGTCGCCAAAGACCCTAATGGCGACGAACCGTTTCGTGTGCGGAAATCTGCAACAAAGGATTCCAAAGGGACCAGAATCTGCAGCT

Ace file of the UniGene sp_v3.0_unigene100759

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	C2H2 type zinc finger family protein (Fragment) n=4 Tax=Pseudotsuga RepID=C6F7G3_PSEMZ	-	-	2.0e-18	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Nucleic acid binding protein, putative	-	-	2.315e-21	-

Source	Gene names
Sma3	12.EGGPLANT.6; 12.POTATO.11; AT4g02670; At1g03840; At2g02070; At2g02080; At2g02080/F5O4.15; At3g13810; At3g45260; At3g50700; At4g02670; At5g03150; At5g44160; At5g66730; B1066G12.13; Ehd2; F15A17.180; GSVIVT00014644001; GSVIVT00022744001; GSVIVT00024511001

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	regulation of cell division	GO:0051302	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G66730.1	C2H2-like zinc finger protein chr5:26641914-26643883 REVERSE LENGTH=500	7.0e-18	69%
RefSeq	Arabidopsis thaliana	NP_201474.1	C2H2-like zinc finger protein [Arabidopsis thaliana]	9.0e-18	69%
RefSeq	Populus trichocarpa	XP_002330146.1	predicted protein, partial [Populus trichocarpa]	5.0e-18	54%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP08

Fln msg: Separated hits, possible frame ERROR between 180 and 182, Distance to subject end: 558 aas, your sequence is shorter than subject: 75 - 698

Fln protein: ATGGGSGAVQQSSTALNNSSAQQQPGVMKRKRNLPGMPDPDAEVIALSPKTLMATNRFVxxEICNKGFQRDQNLQ

Protein Length: 76

Fln nts: GCCACTGGTGGCGGCAGCGGAGCGGTTCAGCAGTCCTCGACGGCGCTTAATAATTCTTCTGCGCAGCAGCAACCCGGTGTGATGAAGCGGAAGAGAAATCTGCCTGGCATGCCTGACCCAGATGCGGAAGTGATAGCTTTGTCGCCAAAGACCCTAATGGCGACGAACCGTTTCGTGTGxxxGGAAATCTGCAACAAAGGATTCCAAAGGGACCAGAATCTGCAGCT

Fln Alignment:

AllPine_a_c26526___GGGSGAVQQSSTALNNSSAQQQPGVMKRKRNLPGMPDPDAEVIALSPKTLMATNRFVCxEICNKGFQRDQNLQ
B8LP08________________GGGSGAVQQSSAPLNNSSAQQQPGVPKRKRNLPGMPDPDAEVIALSPKTLMATNRFVCxEICNKGFQRDQNLQ

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain