SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100707

Length: 239 nt

UniGene Fasta

>sp_v3.0_unigene100707
TATTGATCCATTGATAATAACAAGGGCCTATTTACTCTTTCTCAGGATCCTGCTCCTGAAGTGAGAAAACTGGTATGGGCTGCAGGAAATCAGGCCGAATCTCAAGCAGTTGAACCAAAGCAGCACATGAGAAATGTCATTGAATACATGTTGCAAGCAAATCAGGACAGCGATGCGGATGTTGCTCTAGAAGCATGTGAATTCTGGTCTGCATTTTGCGAAGCTCGTCTTCCTCCAGA

Ace file of the UniGene sp_v3.0_unigene100707

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transportin [Arabidopsis thaliana]	-	-	2.0e-17	56%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	65%
Sma3	Putative transportin	-	-	3.335e-09	-

Source	Gene names
Sma3	At2g16950; GSVIVT00015503001; GSVIVT00036165001; PHYPADRAFT_162281; PHYPADRAFT_176214; PHYPADRAFT_203270; PHYPADRAFT_224057; POPTRDRAFT_804102; POPTRDRAFT_818217; RCOM_0977270; TRN1; VITISV_021642; VITISV_033175;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein transporter activity	GO:0008565	Molecular Function	-
Sma3	protein import into nucleus, docking	GO:0000059	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Importin-beta, N-terminal	IPR001494	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G16950.1	TRN1, ATTRN1 transportin 1 chr2:7353939-7360637 FORWARD LENGTH=895	2.0e-22	56%
RefSeq	Arabidopsis thaliana	NP_001031359.1	transportin 1 [Arabidopsis thaliana]	3.0e-22	56%
RefSeq	Populus trichocarpa	XP_002305534.1	predicted protein [Populus trichocarpa]	3.0e-18	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9TNZ4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 598 aas, your sequence is shorter than subject: 79 - 896

Fln protein: Y*SIDNNKGLFTLSQDPAPEVRKLVWAAGNQAESQAVEPKQHMRNVIEYMLQANQDSDADVALEACEFWSAFCEARLPP

Protein Length: 80

Fln nts: TATTGATCCATTGATAATAACAAGGGCCTATTTACTCTTTCTCAGGATCCTGCTCCTGAAGTGAGAAAACTGGTATGGGCTGCAGGAAATCAGGCCGAATCTCAAGCAGTTGAACCAAAGCAGCACATGAGAAATGTCATTGAATACATGTTGCAAGCAAATCAGGACAGCGATGCGGATGTTGCTCTAGAAGCATGTGAATTCTGGTCTGCATTTTGCGAAGCTCGTCTTCCTCCAGA

Fln Alignment:

AllPine_a_c26391___KGLFTLSQDPAPEVRKLVWAAGNQ---AESQAVEPKQHMRNVIEYMLQANQDSDADVALEACEFWSAFCEARLPP
A9TNZ4________________QGLFSLANDSVGDVRKLVCAALVQLLEVQPNALQP--HMRNVIEYMLQANKDPDRDVALEACEFWSAFCEAHLPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain