SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene100124

Length: 409 nt

UniGene Fasta

>sp_v3.0_unigene100124
GACTCCGCCAGTAAGTCCACCATTGCTGTTAGATACTTCTTCACACTTATCTGTGCTTTGCTCTTTGGAACGATCTTTTGGAGGGTCGGCACAAAACGGGATAGTAGCAGCGATCTCTTTATCGTTGCCGGGGCTTTGTATGGAGCAGTTATATTCTTAGGAGTCAATAACTGTTCAACCGTGCAACCTGTGGTTGCAGTAGAGAGAACTGTGTTCTACAGAGAAAGGGCTGCAGGAATGTACTCTGCATTGCCCTATGCTCTCGCTCAGGTGGTGATTGAGCTTCCATACATCCTTGTCCAGACAATTATGTACACTCTTATCGTTTACAGTATGGTTCATTTCGAGTGGACAGCTACGAAGTTTGCCTGGTTCTTCTTCCTGAACTACTTGACATTTCTCTACTTCA

Ace file of the UniGene sp_v3.0_unigene100124

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABC transporter family, pleiotropic drug resistance protein n=1 Tax=Populus trichocarpa RepID=B9GGM3_POPTR	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Sma3	ATP-binding cassette transporter, putative	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	1.73102e-41	-
Sma3	Heme-transporting ATPase.	EC:3.6.3.41	-	4.826e-11	-

Source	Gene names
Sma3	ABC1; At1g15210; At1g15520; At1g59870; At1g66950; At2g26910; At2g29940; At2g36380; At3g16340; At3g30842; B1045F02.15; B1090H08.39; CHLREDRAFT_131711; F12C20.5; F1O11.1; F1O19.3; F23F1.14; F23H11.19; F9L1.15; GSVIVT00000322001; GSVIVT00012684001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	cadmium ion transmembrane transporter activity	GO:0015086	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	systemic acquired resistance	GO:0009627	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	cadmium ion transport	GO:0015691	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-
Sma3	negative regulation of defense response	GO:0031348	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L11	IPR000911	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Proteinase inhibitor I2, Kunitz metazoa	IPR002223	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Pleiotropic drug resistance protein PDR	IPR005285	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G59870.1	PEN3, PDR8, ATPDR8, ABCG36, ATABCG36 ABC-2 and Plant PDR ABC-type transporter family protein chr1:22034661-22039844 FORWARD LENGTH=1469	66%
RefSeq	Arabidopsis thaliana	NP_176196.1	ABC transporter G family member 36 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002298240.1	ABC transporter family, pleiotropic drug resistance protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: Distance to subject end: 129 aas, your sequence is shorter than subject: 136 - 412

Fln protein: DSASKSTIAVRYFFTLICALLFGTIFWRVGTKRDSSSDLFIVAGALYGAVIFLGVNNCSTVQPVVAVERTVFYRERAAGMYSALPYALAQVVIELPYILVQTIMYTLIVYSMVHFEWTATKFAWFFFLNYLTFLYF

Protein Length: 137

Fln nts: GACTCCGCCAGTAAGTCCACCATTGCTGTTAGATACTTCTTCACACTTATCTGTGCTTTGCTCTTTGGAACGATCTTTTGGAGGGTCGGCACAAAACGGGATAGTAGCAGCGATCTCTTTATCGTTGCCGGGGCTTTGTATGGAGCAGTTATATTCTTAGGAGTCAATAACTGTTCAACCGTGCAACCTGTGGTTGCAGTAGAGAGAACTGTGTTCTACAGAGAAAGGGCTGCAGGAATGTACTCTGCATTGCCCTATGCTCTCGCTCAGGTGGTGATTGAGCTTCCATACATCCTTGTCCAGACAATTATGTACACTCTTATCGTTTACAGTATGGTTCATTTCGAGTGGACAGCTACGAAGTTTGCCTGGTTCTTCTTCCTGAACTACTTGACATTTCTCTACTTCA

Fln Alignment:

AllPine_a_c24803___VRYFFTLICALLFGTIFWRVGTKRDSSSDLFIVAGALYGAVIFLGVNNCSTVQPVVAVERTVFYRERAAGMYSALPYALAQVVIELPYILVQTIMYTLIVYSMVHFEWTATKFAW
D5ACV1________________VRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
96	66		33		0.997476
138	33		66		0.997476
180		66		33	0.997464
295		66		33	0.997471
297		33		66	0.997458
307	66		33		0.997458
343			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain