SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99927

Length: 454 nt

UniGene Fasta

>sp_v3.0_unigene99927
GAGATGTGACGACTATGCATGCTAACAGTGGCTTTGGTTGTGAATAGCTTCTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACGAGTCACTTCTATAGTTAATGGCTTATGTTTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCATTTGAACCTGCGGTCAATACATTGAGGGAAGTGGAAGCATTTTAACCATA

Ace file of the UniGene sp_v3.0_unigene99927

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PI-PLC X domain-containing protein [Arabidopsis thaliana] sp\|Q93XX5.1\|Y5713_ARATH RecName: Full=PI-PLC X domain-containing protein At5g67130; Flags: Precursor gb\|AAK96865.1\| Unknown protein [Arabidopsis thaliana] gb\|AAM10115.1\| unknown protein [Arabidopsi	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Phospholipase C, putative	-	-	2.788e-19	-

Source	Gene names
Sma3	AT4g36950; At1g49740; At3g19310; At5g67130; B0222C05.4; C7A10.410; F14J22.5; G9-3; GSVIVT00019507001; GSVIVT00019522001; GSVIVT00036614001; GSVIVT00038068001; H0814G11.11; K21H1.9; LOC_Os03g30130; OJ1310_F05.17; OSJNBa0039K24.18; OSJNBa0042L16.20; OSJNBb0

Source	GOs	Term	Type	Identity
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	phosphoric diester hydrolase activity	GO:0008081	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3		IPR004141	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Six-bladed beta-propeller, TolB-like	IPR011042	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain	IPR017946	-	-
Sma3	Strictosidine synthase, conserved region	IPR018119	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67130.1	PLC-like phosphodiesterases superfamily protein chr5:26791599-26793649 FORWARD LENGTH=426	69%
RefSeq	Arabidopsis thaliana	NP_569045.1	PI-PLC X domain-containing protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002310130.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAN6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 229 aas, atg_distance in limit (1-15): atg_distance = 11, your sequence is shorter than subject: 145 - 389

Fln protein: MHANSGFGCE*LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATRVTSIVNGLCFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTAFEPAVNTLREVEAF*

Protein Length: 146

Fln nts: GAGATGTGACGACT_-_ATGCATGCTAACAGTGGCTTTGGTTGTGAATAGCTTCTGGACTCCTGCTATACTGCAGGAGACTGTGGATCTGGTCTATATTGCAGTACTTGCCCGGCTGTTGGTCAGAACCAACCAGTTTGTGTTAGAGGACAAGCCACACGAGTCACTTCTATAGTTAATGGCTTATGTTTCAATAAATATACATGGCTGACAACCCACAATGCTTTTTCGATAATCGGGGAACAATCCTATACAGGAACTGCAAGAGTTACATTCTATAACCAAGAAGACACTGTGACAAATCAGCTGAATAATGGCGCGAGGGGATTGATGCTGGACATGTATGATTTCATGGGAGATGTTTGGCTTTGCCATTCATTTGGAGGGCAATGCTACAACTTCACAGCATTTGAACCTGCGGTCAATACATTGAGGGAAGTGGAAGCATTTTAACCATA

Fln Alignment:

AllPine_a_c24063___TMHANSGFGCE*LLDSCYTAGDCGSGLYCSTCPAVGQNQPVCVRGQATRVTSIVNGLCFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDTVTNQLNNGARGLMLDMYDFMGDVWLCHSFGGQCYNFTAFEPAVNTLREVEAF
D5AAN6_______________TARACSNGGCQ-LLDSCYTEGDCGSGLYCSTCQAVGQNQPVCVRGQATIVTSIVNGLPFNKYTWLTTHNAFSIIGEQSYTGTARVTFYNQEDSVTNQLNNGVRGLMLDMYDFMGDVWLCHSLQGQCYNFTAFEPAINTLREVEAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain