SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99660

Length: 2018 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene99660
AATTAAAAACGGAATAGCACGGTATTATCCGTACACTACTCTCGTCCGTTTCTTGGGTGTTACAGAGCATGAGATTCCGCTGGAAAGCGAAGAAACTGCATAGGAATGCAAAGAATTCTTCCCAATTCATCCATCTCATTAATAATTCCTTCTTTCAATCAACCGTCCAGTCCAAGGTTCGAATCTTTATGTATGCAATTTGCTGGTTGGAATACAATAACACGAATGGATTGGCTCTGTTCTGATCAGTTCTTCAAACTCTAATTCTGTGGAGAATTCGTGGAATTTTCAAAGTTATTATGGGCTCTTCAAAGATGAAATGGCTCAGGTGCTTGTGAATTTATGGTTCTGGAAGGACTCGATCTCTAGACCTGATTTAATAATCCGTCGAACATATCGAGCTGGGGGTGGTGTGTGAACTGCGAGTGTGTAGGGGTGAAATTTGAGGTTTTCATCGGTGAGAAACGATGTCGATGGATGAAAATTTGTTGGACGATATAATAAGGCGGTTGCTGGAGACGAAAAATGCCAGAACAATAAGGCAAGCGCAGGTGACGGAAGCCGAGGTACGGCAGCTCTGTCAAGTTTCAAAAGACATATTTCTCAATCAACCGAATTTATTGGAGCTCGAGGCGCCTATAAAGATCTGCGGTGATATACATGGTCAATATTCAGACTTGTTACGGCTGTTTGAGTATGGTGGCTATCCACCACAAGCAAAATATTTGTTTTTAGGGGACTATGTAGATCGTGGAAAGCAGAGCATAGAGACAATATGCCTTCTTCTGTCATACAAAATAAAATTCCCTGAAAACTTCTTTCTCTTGAGGGGAAACCATGAATGTGCTTCAATCAATAAAATTTATGGTTTCTATGATGAATGTAAGCGGCGGTACAATGTTCGGATATGGAAGGCTTTCATAGAATGTTTCAACTGTTTGCCTGTTGCTGCTCTTATAGATGAAAAAATTCTATGTATGCATGGAGGTCTATCCCCTGATTTGAAGGACTTGAGGCAGATCAGGGATGATATTACGCGACCTTTAGATGTGCCAGATCAAGGTCTACTGTGTGATCTTCTTTGGGCAGATCCAGATAAGGATATTGTAGGCTGGGGTGAGAATGACAGAGGCGTCTCATACACCTTTGGAGCTGATAAAGTTACTGAATTTCTACAAAAACATGATCTTGACTTAATATGTCGTGCTCACCAGGTGGTGGAGGATGGCTATGAATTCTTTGCCAAAAGGCAGCTTGTAACTATCTTTTCAGCTCCTAATTATTGTGGAGAATTTGGGGAGGTGAAGACTGATGATAAGTTTGAGGAGTACGAGAAGGCGAGGAAGGAAGAGAAGCATCACAAGCATCTGGAGGAATTGGGTGGACTGGGAGCTGTGGCCACCGGAGCCTTTGCACTCCACGAGAAGCACGCAGAAAAGAAGGATCCAGAGCACGCTCACAGGCACAAGATTGAAGAGGAGATTGCAGCAGCAGCTGCGGTGGGAGAAGGGGGTTACGTCTTTCATGAGCATCACGAGAAGAAGGAAGCGTAACTGTTTCCTCGTGAGACAGAACGGCAACAGCAGCGCCAAGGTTCAGTTTAGCAGAGAGCCTAACAATCTTTACAACTTGCACTCATACAAGTATTCAGGTCTGGCGAATGACAAGACCGTTTCTATTACACCTGCTGGCGAAGATCTGGCAGTTGTGCTTGCAACAACAAAGACAAAGAAGCTGAACAAGCCTGCGGATTCTGTCCATAGATCAGTTCTGAAGAAAGAGTTCCGCAAAATGGCCAAGGCTGTCATAAACCAGGTTGACGAGAACTATTATCGGCGTGACCTAAAGAAAGCAGCTCTTGCGAGGCTTAGTGCTGTGCATAAAAGTCTGCGTGTGGCAAAGGCTGGTGGAAAGAAAAAATCAAAGGGGAAAAAGGCTATTAGGAAATGAGGGAGTAGTCTGAATTAATACTAACTGTGTAGTGCCAAAGGCAAGCAAAACGCCGGAAGAAAGAACGC

Ace file of the UniGene sp_v3.0_unigene99660 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine/threonine-protein phosphatase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TV73_VITVI	-	-	0.0	86%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	0.0	-

Source	Gene names
Sma3	RCOM_1689260;

Source	InterPros	Term	Type	e value	Identity
Sma3	Metallophosphoesterase domain	IPR004843	-	0.0	-
Sma3	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G11240.1	TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein chr4:6847333-6849032 FORWARD LENGTH=322	83%
RefSeq	Arabidopsis thaliana	NP_567375.1	serine/threonine-protein phosphatase PP1 isozyme 6 [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002298008.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA89

Fln msg: your sequence is longer than subject: 362 - 325

Fln protein: MSMDENLLDDIIRRLLETKNARTIRQAQVTEAEVRQLCQVSKDIFLNQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPQAKYLFLGDYVDRGKQSIETICLLLSYKIKFPENFFLLRGNHECASINKIYGFYDECKRRYNVRIWKAFIECFNCLPVAALIDEKILCMHGGLSPDLKDLRQIRDDITRPLDVPDQGLLCDLLWADPDKDIVGWGENDRGVSYTFGADKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFGEVKTDDKFEEYEKARKEEKHHKHLEELGGLGAVATGAFALHEKHAEKKDPEHAHRHKIEEEIAAAAAVGEGGYVFHEHHEKKEA*

Protein Length: 363

Fln nts: AATTAAAAACGGAATAGCACGGTATTATCCGTACACTACTCTCGTCCGTTTCTTGGGTGTTACAGAGCATGAGATTCCGCTGGAAAGCGAAGAAACTGCATAGGAATGCAAAGAATTCTTCCCAATTCATCCATCTCATTAATAATTCCTTCTTTCAATCAACCGTCCAGTCCAAGGTTCGAATCTTTATGTATGCAATTTGCTGGTTGGAATACAATAACACGAATGGATTGGCTCTGTTCTGATCAGTTCTTCAAACTCTAATTCTGTGGAGAATTCGTGGAATTTTCAAAGTTATTATGGGCTCTTCAAAGATGAAATGGCTCAGGTGCTTGTGAATTTATGGTTCTGGAAGGACTCGATCTCTAGACCTGATTTAATAATCCGTCGAACATATCGAGCTGGGGGTGGTGTGTGAACTGCGAGTGTGTAGGGGTGAAATTTGAGGTTTTCATCGGTGAGAAACG_-_ATGTCGATGGATGAAAATTTGTTGGACGATATAATAAGGCGGTTGCTGGAGACGAAAAATGCCAGAACAATAAGGCAAGCGCAGGTGACGGAAGCCGAGGTACGGCAGCTCTGTCAAGTTTCAAAAGACATATTTCTCAATCAACCGAATTTATTGGAGCTCGAGGCGCCTATAAAGATCTGCGGTGATATACATGGTCAATATTCAGACTTGTTACGGCTGTTTGAGTATGGTGGCTATCCACCACAAGCAAAATATTTGTTTTTAGGGGACTATGTAGATCGTGGAAAGCAGAGCATAGAGACAATATGCCTTCTTCTGTCATACAAAATAAAATTCCCTGAAAACTTCTTTCTCTTGAGGGGAAACCATGAATGTGCTTCAATCAATAAAATTTATGGTTTCTATGATGAATGTAAGCGGCGGTACAATGTTCGGATATGGAAGGCTTTCATAGAATGTTTCAACTGTTTGCCTGTTGCTGCTCTTATAGATGAAAAAATTCTATGTATGCATGGAGGTCTATCCCCTGATTTGAAGGACTTGAGGCAGATCAGGGATGATATTACGCGACCTTTAGATGTGCCAGATCAAGGTCTACTGTGTGATCTTCTTTGGGCAGATCCAGATAAGGATATTGTAGGCTGGGGTGAGAATGACAGAGGCGTCTCATACACCTTTGGAGCTGATAAAGTTACTGAATTTCTACAAAAACATGATCTTGACTTAATATGTCGTGCTCACCAGGTGGTGGAGGATGGCTATGAATTCTTTGCCAAAAGGCAGCTTGTAACTATCTTTTCAGCTCCTAATTATTGTGGAGAATTTGGGGAGGTGAAGACTGATGATAAGTTTGAGGAGTACGAGAAGGCGAGGAAGGAAGAGAAGCATCACAAGCATCTGGAGGAATTGGGTGGACTGGGAGCTGTGGCCACCGGAGCCTTTGCACTCCACGAGAAGCACGCAGAAAAGAAGGATCCAGAGCACGCTCACAGGCACAAGATTGAAGAGGAGATTGCAGCAGCAGCTGCGGTGGGAGAAGGGGGTTACGTCTTTCATGAGCATCACGAGAAGAAGGAAGCGTAA___CTGTTTCCTCGTGAGACAGAACGGCAACAGCAGCGCCAAGGTTCAGTTTAGCAGAGAGCCTAACAATCTTTACAACTTGCACTCATACAAGTATTCAGGTCTGGCGAATGACAAGACCGTTTCTATTACACCTGCTGGCGAAGATCTGGCAGTTGTGCTTGCAACAACAAAGACAAAGAAGCTGAACAAGCCTGCGGATTCTGTCCATAGATCAGTTCTGAAGAAAGAGTTCCGCAAAATGGCCAAGGCTGTCATAAACCAGGTTGACGAGAACTATTATCGGCGTGACCTAAAGAAAGCAGCTCTTGCGAGGCTTAGTGCTGTGCATAAAAGTCTGCGTGTGGCAAAGGCTGGTGGAAAGAAAAAATCAAAGGGGAAAAAGGCTATTAGGAAATGAGGGAGTAGTCTGAATTAATACTAACTGTGTAGTGCCAAAGGCAAGCAAAACGCCGGAAGAAAGAACGC

Fln Alignment:

AllPine_a_c23000___MDENLLDDIIRRLLETKNARTIRQAQVTEAEVRQLCQVSKDIFLNQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGYPPQAKYLFLGDYVDRGKQSIETICLLLSYKIKFPENFFLLRGNHECASINKIYGFYDECKRRYNVRIWKAFIECFNCLPVAALIDEKILCMHGGLSPDLKDLRQIRDDITRPLDVPDQGLLCDLLWADPDKDIVGWGENDRGVSYTFGADKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEF
D5AA89_______________MEQSLVDDIIVRLLDAKESRSVKQVQLSEAEIRQLCLTSKDIFISQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPSANYLFLGDYVDRGKQSLETICLLLAYKIKFPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKIFTDCFNCLPVAALIDEKILCMHGGLSPDLQSLDQIR-NIARPTDVPDQGLLCDLLWADPDKDIEGWGENDRGVSYTFGPDKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEF

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
1648		16		83	0.994512
1676		71		28	1.0
1986	88	11			0.923566
1987		11	88		0.923566
1989	11		88		0.92373
1990			88	11	0.92373
2011	87	12			0.992554
2013	37	37		25	1.0
2014	37	37	25		1.0
2015	87	12			0.992554
2016	28	14	28	28	1.0
2017	20		40	40	1.0
2019	50		33	16	1.0
2022	50		50		1.0
2024	50	50			1.0
2026	50		50		1.0
2032	60	40			1.0
2033	40		60		1.0
2034		40		60	1.0
2037	80	20			0.995494
2039		20	80		0.995495
2040		33	66		0.997456

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain