SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene99469

Length: 720 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene99469 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9RNF3_RICCO	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%

Source	Gene names
Sma3	At3g62470; At3g62540; At5g14820; GSVIVT00031561001; OJ1537_B05.15; OSJNBa0036C12.7; Os05g0355200; OsI_19602; OsJ_18196; POPTRDRAFT_245595; RCOM_1347350; T12C14_170; T12C14_240; T9L3_120; VITISV_028672;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	polynucleotide adenylyltransferase activity	GO:0004652	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Poly(A) polymerase, central domain	IPR007012	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62470.1	Pentatricopeptide repeat (PPR) superfamily protein chr3:23106600-23108399 REVERSE LENGTH=599	54%
RefSeq	Arabidopsis thaliana	NP_191806.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002320305.1	predicted protein, partial [Populus trichocarpa]	55%

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
181	33			66	0.997452
183		66	33		0.997452
184			66	33	0.997452
340		25		75	1.0
341	75	25			1.0
342		25		75	1.0
344	75			25	1.0
395	60	40			1.0
605	16	16			0.988813
606	16	83			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain